Job Description P76123 Confidence 99.68% Date Thu Jan 5 12:19:16 GMT 2012 Rank 52 Aligned Residues 300 % Identity 9% Template c1k5dL_ PDB info PDB header:signaling protein/signaling activator Chain: L: PDB Molecule:ran gtpase activating protein 1; PDBTitle: crystal structure of ran-gppnhp-ranbp1-rangap complex Resolution 2.70 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.						.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																		.	.																				.	.	.	.	.
Query SS confidence																		.	.																				.	.	.	.	.
Query Sequence		R	M	K	T	I	T	L	N	D	N	H	I	A	H	L	N	.	.	A	K	N	T	T	K	L	E	Y	L	N	L	S	N	N	N	L	L	P	.	.	.	.	.	T	N	D	I	D	Q	L	I	S	S	K	H	L	W	H	V	L	V	N	G	I	N	N	D	P	L	A	Q	M	Q	Y	W	T	A	V	R	N	I
Query Conservation																		.	.																				.	.	.	.	.
Alig confidence																		.	.																				.	.	.	.	.
Template Conservation
Template Sequence		S	L	K	L	D	A	I	T	T	E	D	E	K	S	V	F	A	V	L	L	E	D	D	S	V	K	E	I	V	L	S	G	N	T	I	G	T	E	A	A	R	W	L	S	E	N	I	A	S	K	K	D	L	E	I	A	E	F	S	D	I	F	T	G	R	V	K	D	E	I	P	E	A	L	R	L	L	L	Q	A
Template Known Secondary structure						S				S					G	G	G							T	T								S	S															T	T		T	T								S			T	T			T	T	T
Template Predicted Secondary structure
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.											140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.	.	.	.
Query Sequence		I	D	D	T	N	E	V	T	I	D	L	S	G	L	N	L	T	T	Q	P	P	G	L	Q	N	F	T	S	I	N	L	D	N	N	Q	F	T	H	F	D	A	T	N	Y	D	R	L	V	K	L	S	L	N	S	N	.	.	.	.	.	.	.	.	.	.	A	L	E	S	I	N	F	P	Q	G	R	N	V	S	I
Query Conservation																																																									.	.	.	.	.	.	.	.	.	.
Alig confidence																																																									.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	L	K	C	P	K	L	H	T	V	R	L	S	D	N	A	F	G	P	T	A	Q	E	P	L	I	D	F	L	S	K	H	T	P	L	E	H	L	Y	L	H	N	N	G	L	G	P	Q	A	G	A	K	I	A	R	A	L	Q	E	L	A	V	N	K	K	A	K	N	A	P	P	L	R	S	I	I	C	G	R	N
Template Known Secondary structure			T	T		T	T								S				S	G	G	G												T	T								S																								T	T	T											S	S
Template Predicted Secondary structure
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	H	I	S	M	N	N	N	A	L	R	N	I	D	I	D	R	L	S	S	V	T	Y	F	S	A	A	H	N	Q	L	E	F	V	Q	L	E	S	C	E	W	L	Q	Y	L	N	L	S	H	N	Q	L	T	D	I	V	A	G	N	K	N	E	L	L	L	L	D	L	S	H	N	K	L	T	S	L	H	N	D	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L	E	N	G	S	M	K	E	W	A	K	T	F	Q	S	H	R	L	L	H	T	V	K	M	V	Q	N	G	I	R	P	E	G	I	E	H	L	L	L	E	G	L	A	Y	C	Q	E	L	K	V	L	D	L	Q	D	N	T	F	T	H	L	G	S	S	A	L	A	I	A	L	K	S	W	P	N	L	R	E	L
Template Known Secondary structure				T	G	G	G												T	T								S															T	G	G	G		T	T							T	T	S														G	G	G		T	T
Template Predicted Secondary structure
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.						280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.
Query SS confidence																																															.	.	.	.	.
Query Sequence		F	P	N	L	N	T	L	L	I	N	N	N	L	L	S	E	I	K	I	F	Y	S	N	F	C	N	V	Q	T	L	N	A	A	N	N	Q	L	K	Y	I	N	L	D	F	L	.	.	.	.	.	T	Y	L	P	S	I	K	S	L	R	L	D	N	N	K	I	T	H	I	D	T	N	N	T	S	D	I	G	T	L
Query Conservation																																															.	.	.	.	.
Alig confidence																																															.	.	.	.	.																					.
Template Conservation																																																																								.
Template Sequence		G	L	N	D	C	L	L	S	A	R	G	A	A	A	V	V	D	A	F	S	K	L	E	N	I	G	L	Q	T	L	R	L	Q	Y	N	E	I	E	L	D	A	V	R	T	L	K	T	V	I	D	E	K	M	P	D	L	L	F	L	E	L	N	G	N	R	F	S	E	E	D	.	D	V	V	D	E	I	R	E	V
Template Known Secondary structure				T	T																			S	S										S	S			B																T	T							T	T	S	B	S		T	T	S	.
Template Predicted Secondary structure																																																																								.
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.		320	.	.	.	.	.	.	.	.
		310	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	P	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	S	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		329	330	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions