Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0C243
DateThu Jan 5 11:30:03 GMT 2012
Unique Job ID9bb3bc59da89eff9

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d1f6va_
Top template information
Fold:C-terminal domain of B transposition protein
Superfamily:C-terminal domain of B transposition protein
Family:C-terminal domain of B transposition protein
Confidence and coverage
Confidence: 73.4% Coverage: 19%
27 residues ( 19% of your sequence) have been modelled with 73.4% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MYCTVKEIIRDVLDTDVPDSECVFAVVLTRGDVRHIAQDWNLSDDELETVMQRLDDAFEY
Secondary structure 
SS confidence 
Disorder  ????
?
?
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  GADVSIVHDVVRELMEEKRASRQVTVPAVMLEKVMALAGSEMKRLYAVGSENGGDGDAFV
Secondary structure 
SS confidence 
Disorder 
??
?
?????
???
????????????
Disorder confidence 
 
   .........130.........140
Sequence  REEREAMDVVLQALDGEHMS
Secondary structure 
SS confidence 
Disorder  ??
??????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1f6v chain A

3D model

Region: 29 - 55
Aligned: 27
Modelled: 27
Confidence: 73.4%
Identity: 22%
Fold: C-terminal domain of B transposition protein
Superfamily: C-terminal domain of B transposition protein
Family: C-terminal domain of B transposition protein

Phyre2

PDB 2elh chain A

3D model

Region: 41 - 73
Aligned: 33
Modelled: 33
Confidence: 54.9%
Identity: 21%
PDB header:dna binding protein
Chain: A: PDB Molecule:cg11849-pa;
PDBTitle: solution structure of the cenp-b n-terminal dna-binding2 domain of fruit fly distal antenna cg11849-pa

Phyre2

PDB 2f2a chain C domain 1

3D model

Region: 29 - 60
Aligned: 32
Modelled: 32
Confidence: 47.3%
Identity: 31%
Fold: Non-globular all-alpha subunits of globular proteins
Superfamily: Glu-tRNAGln amidotransferase C subunit
Family: Glu-tRNAGln amidotransferase C subunit

Phyre2

PDB 1hlv chain A domain 1

3D model

Region: 41 - 73
Aligned: 33
Modelled: 33
Confidence: 45.1%
Identity: 18%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: Homeodomain-like
Family: Centromere-binding

Phyre2

PDB 3thg chain A

3D model

Region: 28 - 78
Aligned: 51
Modelled: 51
Confidence: 43.6%
Identity: 24%
PDB header:protein binding
Chain: A: PDB Molecule:ribulose bisphosphate carboxylase/oxygenase activase 1,
PDBTitle: crystal structure of the creosote rubisco activase c-domain

Phyre2

PDB 2znr chain A

3D model

Region: 82 - 109
Aligned: 28
Modelled: 28
Confidence: 36.2%
Identity: 32%
PDB header:hydrolase
Chain: A: PDB Molecule:amsh-like protease;
PDBTitle: crystal structure of the dub domain of human amsh-lp

Phyre2

PDB 3kfu chain J

3D model

Region: 29 - 60
Aligned: 32
Modelled: 32
Confidence: 33.8%
Identity: 19%
PDB header:ligase/rna
Chain: J: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit c;
PDBTitle: crystal structure of the transamidosome

Phyre2

PDB 2l4d chain A

3D model

Region: 40 - 56
Aligned: 17
Modelled: 17
Confidence: 33.5%
Identity: 24%
PDB header:electron transport
Chain: A: PDB Molecule:sco1/senc family protein/cytochrome c;
PDBTitle: cytochrome c domain of pp3183 protein from pseudomonas putida

Phyre2

PDB 3iwp chain K

3D model

Region: 2 - 63
Aligned: 49
Modelled: 62
Confidence: 32.7%
Identity: 33%
PDB header:metal binding protein
Chain: K: PDB Molecule:copper homeostasis protein cutc homolog;
PDBTitle: crystal structure of human copper homeostasis protein cutc

Phyre2

PDB 1twd chain A

3D model

Region: 2 - 63
Aligned: 49
Modelled: 62
Confidence: 32.0%
Identity: 24%
Fold: TIM beta/alpha-barrel
Superfamily: CutC-like
Family: CutC-like

Phyre2

PDB 3cp5 chain A

3D model

Region: 40 - 59
Aligned: 20
Modelled: 20
Confidence: 31.8%
Identity: 20%
PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c;
PDBTitle: cytochrome c from rhodothermus marinus

Phyre2

PDB 1k87 chain A

3D model

Region: 45 - 96
Aligned: 52
Modelled: 52
Confidence: 30.7%
Identity: 19%
PDB header:oxidoreductase
Chain: A: PDB Molecule:proline dehydrogenase;
PDBTitle: crystal structure of e.coli puta (residues 1-669)

Phyre2

PDB 1c75 chain A

3D model

Region: 40 - 56
Aligned: 17
Modelled: 17
Confidence: 30.2%
Identity: 24%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: monodomain cytochrome c

Phyre2

PDB 2w7n chain A

3D model

Region: 29 - 100
Aligned: 72
Modelled: 72
Confidence: 27.5%
Identity: 19%
PDB header:transcription/dna
Chain: A: PDB Molecule:trfb transcriptional repressor protein;
PDBTitle: crystal structure of kora bound to operator dna: insight2 into repressor cooperation in rp4 gene regulation

Phyre2

PDB 1dvv chain A

3D model

Region: 40 - 56
Aligned: 17
Modelled: 17
Confidence: 26.4%
Identity: 29%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: monodomain cytochrome c

Phyre2

PDB 2k7w chain B

3D model

Region: 27 - 41
Aligned: 15
Modelled: 15
Confidence: 25.5%
Identity: 20%
PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-like protein 11;
PDBTitle: bax activation is initiated at a novel interaction site

Phyre2

PDB 1fcd chain C domain 1

3D model

Region: 41 - 56
Aligned: 16
Modelled: 16
Confidence: 23.4%
Identity: 13%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: Two-domain cytochrome c

Phyre2

PDB 1gks chain A

3D model

Region: 39 - 56
Aligned: 18
Modelled: 18
Confidence: 23.3%
Identity: 11%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: monodomain cytochrome c

Phyre2

PDB 1cor chain A

3D model

Region: 39 - 56
Aligned: 18
Modelled: 18
Confidence: 22.8%
Identity: 6%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: monodomain cytochrome c

Phyre2

PDB 1ynr chain A domain 1

3D model

Region: 40 - 56
Aligned: 17
Modelled: 17
Confidence: 22.4%
Identity: 24%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: monodomain cytochrome c

Phyre2
1
d1f6va_
2
c2elhA_
3
d2f2ac1
4
d1hlva1
5
c3thgA_
6
c2znrA_
7
c3kfuJ_
8
c2l4dA_
9
c3iwpK_
10
d1twda_
11
c3cp5A_
12
c1k87A_
13
d1c75a_
14
c2w7nA_
15
d1dvva_
16
c2k7wB_
17
d1fcdc1
18
d1gksa_
19
d1cora_
20
d1ynra1
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1f6va_
73.4 22 Fold:C-terminal domain of B transposition protein
Superfamily:C-terminal domain of B transposition protein
Family:C-terminal domain of B transposition protein
2c2elhA_
54.9 21 PDB header:dna binding protein
Chain: A: PDB Molecule:cg11849-pa;
PDBTitle: solution structure of the cenp-b n-terminal dna-binding2 domain of fruit fly distal antenna cg11849-pa
3d2f2ac1
47.3 31 Fold:Non-globular all-alpha subunits of globular proteins
Superfamily:Glu-tRNAGln amidotransferase C subunit
Family:Glu-tRNAGln amidotransferase C subunit
4d1hlva1
45.1 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Centromere-binding
5c3thgA_
43.6 24 PDB header:protein binding
Chain: A: PDB Molecule:ribulose bisphosphate carboxylase/oxygenase activase 1,
PDBTitle: crystal structure of the creosote rubisco activase c-domain
6c2znrA_
36.2 32 PDB header:hydrolase
Chain: A: PDB Molecule:amsh-like protease;
PDBTitle: crystal structure of the dub domain of human amsh-lp
7c3kfuJ_
33.8 19 PDB header:ligase/rna
Chain: J: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit c;
PDBTitle: crystal structure of the transamidosome
8c2l4dA_
33.5 24 PDB header:electron transport
Chain: A: PDB Molecule:sco1/senc family protein/cytochrome c;
PDBTitle: cytochrome c domain of pp3183 protein from pseudomonas putida
9c3iwpK_
32.7 33 PDB header:metal binding protein
Chain: K: PDB Molecule:copper homeostasis protein cutc homolog;
PDBTitle: crystal structure of human copper homeostasis protein cutc
10d1twda_
32.0 24 Fold:TIM beta/alpha-barrel
Superfamily:CutC-like
Family:CutC-like
11c3cp5A_
31.8 20 PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c;
PDBTitle: cytochrome c from rhodothermus marinus
12c1k87A_
30.7 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:proline dehydrogenase;
PDBTitle: crystal structure of e.coli puta (residues 1-669)
13d1c75a_
30.2 24 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
14c2w7nA_
27.5 19 PDB header:transcription/dna
Chain: A: PDB Molecule:trfb transcriptional repressor protein;
PDBTitle: crystal structure of kora bound to operator dna: insight2 into repressor cooperation in rp4 gene regulation
15d1dvva_
26.4 29 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
16c2k7wB_
25.5 20 PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-like protein 11;
PDBTitle: bax activation is initiated at a novel interaction site
17d1fcdc1
23.4 13 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Two-domain cytochrome c
18d1gksa_
23.3 11 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
19d1cora_
22.8 6 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
20d1ynra1
22.4 24 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
21d1a56a_
not modelled 22.4 19 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
22d1dvha_
not modelled 22.2 25 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
23c3h0mU_
not modelled 22.1 28 PDB header:ligase
Chain: U: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit c;
PDBTitle: structure of trna-dependent amidotransferase gatcab from2 aquifex aeolicus
24d1c53a_
not modelled 21.5 19 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
25d1fi3a_
not modelled 21.3 6 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
26c2zzsW_
not modelled 21.1 25 PDB header:electron transport
Chain: W: PDB Molecule:
PDBTitle: crystal structure of cytochrome c554 from vibrio2 parahaemolyticus strain rimd2210633
27d1ls9a_
not modelled 20.4 26 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
28c3o0rC_
not modelled 20.2 19 PDB header:immune system/oxidoreductase
Chain: C: PDB Molecule:nitric oxide reductase subunit c;
PDBTitle: crystal structure of nitric oxide reductase from pseudomonas2 aeruginosa in complex with antibody fragment
29c2zxyA_
not modelled 19.6 23 PDB header:oxygen binding, transport protein
Chain: A: PDB Molecule:cytochrome c552;
PDBTitle: crystal structure of cytochrome c555 from aquifex aeolicus
30d1b3qa1
not modelled 19.3 37 Fold:ROP-like
Superfamily:Homodimeric domain of signal transducing histidine kinase
Family:Homodimeric domain of signal transducing histidine kinase
31d1f1ca_
not modelled 19.2 28 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
32c3kz0C_
not modelled 18.5 20 PDB header:apoptosis
Chain: C: PDB Molecule:mcl-1 specific peptide mb7;
PDBTitle: mcl-1 complex with mcl-1-specific selected peptide
33c3kz0D_
not modelled 18.5 20 PDB header:apoptosis
Chain: D: PDB Molecule:mcl-1 specific peptide mb7;
PDBTitle: mcl-1 complex with mcl-1-specific selected peptide
34c3kj1B_
not modelled 18.3 20 PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-like protein 11;
PDBTitle: mcl-1 in complex with bim bh3 mutant i2da
35d1cyja_
not modelled 17.8 29 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
36d1cc5a_
not modelled 17.7 28 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
37d1kx5b_
not modelled 17.3 17 Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
38d1f1fa_
not modelled 17.2 32 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
39d1m70a2
not modelled 16.9 19 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Two-domain cytochrome c
40d1h1oa1
not modelled 16.4 6 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Two-domain cytochrome c
41d1h1oa2
not modelled 16.4 19 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Two-domain cytochrome c
42d1alna1
not modelled 16.4 24 Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
43c2d0sA_
not modelled 16.3 6 PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c;
PDBTitle: crystal structure of the cytochrome c552 from moderate2 thermophilic bacterium, hydrogenophilus thermoluteolus
44d1m70a1
not modelled 15.9 31 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Two-domain cytochrome c
45d1kx7a_
not modelled 15.7 7 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
46d1e29a_
not modelled 15.2 16 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
47c2k9lA_
not modelled 15.2 30 PDB header:transcription
Chain: A: PDB Molecule:rna polymerase sigma factor rpon;
PDBTitle: structure of the core binding domain of sigma54
48c1w5cT_
not modelled 15.0 21 PDB header:photosynthesis
Chain: T: PDB Molecule:cytochrome c-550;
PDBTitle: photosystem ii from thermosynechococcus elongatus
49d1ccra_
not modelled 14.8 13 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
50c1w2lA_
not modelled 14.5 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome oxidase subunit ii;
PDBTitle: cytochrome c domain of caa3 oxygen oxidoreductase
51d1h9xa1
not modelled 14.4 17 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
52c2l66B_
not modelled 14.2 35 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, abrb family;
PDBTitle: the dna-recognition fold of sso7c4 suggests a new member of spovt-abrb2 superfamily from archaea.
53d1lvaa3
not modelled 14.2 26 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:C-terminal fragment of elongation factor SelB
54d1hzua1
not modelled 14.2 14 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
55c2nl9B_
not modelled 14.0 20 PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-like protein 11;
PDBTitle: crystal structure of the mcl-1:bim bh3 complex
56c1y6uA_
not modelled 13.9 15 PDB header:dna binding protein
Chain: A: PDB Molecule:excisionase from transposon tn916;
PDBTitle: the structure of the excisionase (xis) protein from2 conjugative transposon tn916 provides insights into the3 regulation of heterobivalent tyrosine recombinases
57d351ca_
not modelled 13.5 29 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
58d1pi1a_
not modelled 13.2 15 Fold:Bromodomain-like
Superfamily:Mob1/phocein
Family:Mob1/phocein
59d1cnoa_
not modelled 13.1 19 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
60c3dljB_
not modelled 12.9 29 PDB header:hydrolase
Chain: B: PDB Molecule:beta-ala-his dipeptidase;
PDBTitle: crystal structure of human carnosine dipeptidase 1
61c2zonG_
not modelled 12.8 15 PDB header:oxidoreductase/electron transport
Chain: G: PDB Molecule:cytochrome c551;
PDBTitle: crystal structure of electron transfer complex of nitrite2 reductase with cytochrome c
62d1dcea2
not modelled 12.8 33 Fold:C2 domain-like
Superfamily:Rab geranylgeranyltransferase alpha-subunit, insert domain
Family:Rab geranylgeranyltransferase alpha-subunit, insert domain
63d1fcdc2
not modelled 12.3 13 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Two-domain cytochrome c
64d1r3ba_
not modelled 12.3 15 Fold:Bromodomain-like
Superfamily:Mob1/phocein
Family:Mob1/phocein
65c2zooA_
not modelled 11.9 27 PDB header:oxidoreductase
Chain: A: PDB Molecule:probable nitrite reductase;
PDBTitle: crystal structure of nitrite reductase from pseudoalteromonas2 haloplanktis tac125
66c3cu4A_
not modelled 11.8 6 PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c family protein;
PDBTitle: omcf, outer membrance cytochrome f from geobacter2 sulfurreducens
67c1pq1B_
not modelled 11.5 20 PDB header:apoptosis
Chain: B: PDB Molecule:bcl2-like protein 11;
PDBTitle: crystal structure of bcl-xl/bim
68d1tj1a1
not modelled 11.5 21 Fold:N-terminal domain of bifunctional PutA protein
Superfamily:N-terminal domain of bifunctional PutA protein
Family:N-terminal domain of bifunctional PutA protein
69c2hjnA_
not modelled 11.5 15 PDB header:cell cycle
Chain: A: PDB Molecule:maintenance of ploidy protein mob1;
PDBTitle: structural and functional analysis of saccharomyces2 cerevisiae mob1
70d1ctja_
not modelled 11.4 31 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
71c1m70D_
not modelled 10.8 19 PDB header:electron transport
Chain: D: PDB Molecule:cytochrome c4;
PDBTitle: crystal structure of oxidized recombinant cytochrome c4 from2 pseudomonas stutzeri
72d1e2rb1
not modelled 10.1 17 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
73c3dmiA_
not modelled 9.9 28 PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c6;
PDBTitle: crystallization and structural analysis of cytochrome c62 from the diatom phaeodactylum tricornutum at 1.5 a3 resolution
74c3g2bA_
not modelled 9.7 10 PDB header:biosynthetic protein
Chain: A: PDB Molecule:coenzyme pqq synthesis protein d;
PDBTitle: crystal structure of pqqd from xanthomonas campestris
75c3io9B_
not modelled 9.6 20 PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-like protein 11;
PDBTitle: biml12y in complex with mcl-1
76c2bpbB_
not modelled 9.5 10 PDB header:oxidoreductase
Chain: B: PDB Molecule:sulfite\:cytochrome c oxidoreductase subunit b;
PDBTitle: sulfite dehydrogenase from starkeya novella
77c3hj8A_
not modelled 9.2 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:catechol 1,2-dioxygenase;
PDBTitle: crystal structure determination of catechol 1,2-dioxygenase from2 rhodococcus opacus 1cp in complex with 4-chlorocatechol
78c3d7vB_
not modelled 8.9 20 PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-like protein 11;
PDBTitle: crystal structure of mcl-1 in complex with an mcl-12 selective bh3 ligand
79d1c6sa_
not modelled 8.9 25 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
80d1mz4a_
not modelled 8.9 21 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
81d1kv9a1
not modelled 8.7 19 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Quinoprotein alcohol dehydrogenase, C-terminal domain
82d1nira1
not modelled 8.7 15 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
83c2qneA_
not modelled 8.6 16 PDB header:transferase
Chain: A: PDB Molecule:putative methyltransferase;
PDBTitle: crystal structure of putative methyltransferase (zp_00558420.1) from2 desulfitobacterium hafniense y51 at 2.30 a resolution
84d1kb0a1
not modelled 8.5 22 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Quinoprotein alcohol dehydrogenase, C-terminal domain
85c2rd5D_
not modelled 8.2 28 PDB header:protein binding
Chain: D: PDB Molecule:pii protein;
PDBTitle: structural basis for the regulation of n-acetylglutamate kinase by pii2 in arabidopsis thaliana
86c3dr0B_
not modelled 8.2 29 PDB header:electron transport
Chain: B: PDB Molecule:cytochrome c6;
PDBTitle: structure of reduced cytochrome c6 from synechococcus sp.2 pcc 7002
87c2kvcA_
not modelled 8.2 40 PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: solution structure of the mycobacterium tuberculosis protein rv0543c,2 a member of the duf3349 superfamily. seattle structural genomics3 center for infectious disease target mytud.17112.a
88c1fcdD_
not modelled 8.1 13 PDB header:electron transport(flavocytochrome)
Chain: D: PDB Molecule:flavocytochrome c sulfide dehydrogenase
PDBTitle: the structure of flavocytochrome c sulfide dehydrogenase2 from a purple phototrophic bacterium chromatium vinosum at3 2.5 angstroms resolution
89d1ffva1
not modelled 8.0 24 Fold:CO dehydrogenase ISP C-domain like
Superfamily:CO dehydrogenase ISP C-domain like
Family:CO dehydrogenase ISP C-domain like
90d2gc4d1
not modelled 7.9 29 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
91d1wvec1
not modelled 7.7 22 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
92d1gdva_
not modelled 7.7 24 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
93d1whua_
not modelled 7.7 38 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
Family:Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
94c1tmxA_
not modelled 7.6 26 PDB header:oxidoreductase
Chain: A: PDB Molecule:hydroxyquinol 1,2-dioxygenase;
PDBTitle: crystal structure of hydroxyquinol 1,2-dioxygenase from2 nocardioides simplex 3e
95d1c6ra_
not modelled 7.5 32 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
96d1dgja1
not modelled 7.4 19 Fold:CO dehydrogenase ISP C-domain like
Superfamily:CO dehydrogenase ISP C-domain like
Family:CO dehydrogenase ISP C-domain like
97c1d1dA_
not modelled 7.3 11 PDB header:viral protein
Chain: A: PDB Molecule:protein (capsid protein);
PDBTitle: nmr solution structure of the capsid protein from rous2 sarcoma virus
98c3bh1A_
not modelled 7.3 22 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0371 protein dip2346;
PDBTitle: crystal structure of protein dip2346 from corynebacterium diphtheriae
99c2pjxD_
not modelled 7.3 41 PDB header:endocytosis/exocytosis
Chain: D: PDB Molecule:syntaxin-4;
PDBTitle: crystal structure of the munc18c/syntaxin4 n-peptide complex

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0