Job Description P0AAE2 Confidence 94.14% Date Thu Jan 5 11:12:41 GMT 2012 Rank 8 Aligned Residues 378 % Identity 11% Template c3hfxA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter; PDBTitle: crystal structure of carnitine transporter Resolution 3.15 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.																								.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Query Sequence		E	S	K	N	K	L	K	R	G	L	S	T	R	H	I	R	F	M	A	L	G	S	A	I	G	T	G	L	F	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	A	D	A	I	K	M	A	G	P	.	S	V	L	L	A	Y	I	I	G	G	I	A	A	Y	I
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Alig confidence						.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template Conservation						.	.	.	.
Template Sequence		N	E	P	P	.	.	.	.	E	F	S	T	A	S	W	I	F	M	M	F	A	S	C	T	S	A	A	V	L	F	W	G	S	I	E	I	Y	Y	Y	I	S	T	P	P	F	G	L	E	P	N	S	T	G	A	K	E	L	G	L	A	Y	S	L	F	H	W	G	P	L	P	W	A	T	Y	S	F	L	S	V	A
Template Known Secondary structure		S	S			.	.	.	.	S	S											T					S																S		S	T	T			T	T																T	S
Template Predicted Secondary structure						.	.	.	.
Template SS confidence
		81	.	.	.					.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		58	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.	.	.	.	80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.										.	.
Predicted Secondary structure													.															.																																											.	.	.	.	.	.	.	.	.
Query SS confidence													.															.																																											.	.	.	.	.	.	.	.	.
Query Sequence		I	M	R	A	L	G	E	M	S	V	H	.	N	P	A	A	S	S	F	S	R	Y	A	Q	E	N	.	L	G	P	L	A	G	Y	I	T	G	W	T	Y	C	F	E	I	L	I	V	A	I	A	D	V	T	A	F	G	I	Y	M	G	V	W	F	P	T	V	P	H	W	.	.	.	.	.	.	.	.	.	I	W
Query Conservation													.															.																																											.	.	.	.	.	.	.	.	.
Alig confidence													.															.																																											.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	A	Y	F	F	F	V	R	K	M	E	V	I	R	P	S	S	T	L	V	P	L	V	G	E	K	H	A	K	G	L	F	G	T	I	V	D	N	F	Y	L	V	A	L	I	F	A	M	G	T	S	L	G	L	A	T	P	L	V	T	E	C	M	Q	W	L	F	G	I	P	H	T	L	Q	L	D	A	I	I	I
Template Known Secondary structure								T	S						S	S	G	G	G	G		T	T	T		S	S		T	T	S	S																																	T	T	S	T	T				T
Template Predicted Secondary structure
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.		.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure																																																																					.
Query SS confidence																																																																					.
Query Sequence		V	L	S	V	V	L	I	I	C	A	V	N	L	M	S	V	K	V	F	G	E	L	E	F	W	F	S	F	F	K	V	A	T	I	I	I	M	I	V	A	G	F	G	I	I	I	W	G	I	G	N	G	G	Q	P	T	G	I	H	N	L	W	S	N	G	G	F	.	F	S	N	G	W	L	G	M	V	M	S	L
Query Conservation																																																																					.
Alig confidence																																																																					.
Template Conservation
Template Sequence		T	C	W	I	I	L	N	A	I	C	V	A	C	G	L	Q	K	G	V	R	I	A	S	D	V	R	S	Y	L	S	F	L	M	L	G	W	V	F	I	V	S	G	A	S	F	I	M	N	Y	F	T	D	S	V	G	M	L	L	M	Y	L	P	R	M	L	F	Y	T	D	P	I	A	K	G	G	F	P	Q	G	W
Template Known Secondary structure													S	S				T	T																																																T					S	S								T
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.										.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure																										.																													.	.	.	.	.	.	.	.	.
Query SS confidence																										.																													.	.	.	.	.	.	.	.	.
Query Sequence		Q	M	V	M	F	A	Y	G	G	I	E	I	I	G	I	T	A	G	E	A	K	D	P	E	.	K	S	I	P	R	A	I	N	S	V	P	M	R	I	L	V	F	Y	V	G	T	L	F	V	I	M	S	I	.	.	.	.	.	.	.	.	.	Y	P	W	N	Q	V	G	T	A	G	S	P	F	V	L	T	F	Q
Query Conservation																										.																													.	.	.	.	.	.	.	.	.
Alig confidence																										.																													.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	V	F	Y	W	A	W	W	V	I	Y	A	I	Q	M	S	I	F	L	A	R	I	S	R	G	R	T	V	R	E	L	C	F	G	M	V	L	G	L	T	A	S	T	W	I	L	W	T	V	L	G	S	N	T	L	L	L	I	D	K	N	I	I	N	I	P	N	L	I	E	Q	Y	G	V	A	R	A	I	I	E
Template Known Secondary structure												T											T		S	S																																			T	T	S								G	G	G
Template Predicted Secondary structure
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	M	G	I	T	F	A	A	S	I	L	N	F	V	V	L	T	A	S	L	S	A	I	N	S	D	V	F	G	V	G	R	M	L	H	G	M	A	E	Q	G	S	A	P	K	I	F	S	K	T	S	R	R	G	I	P	W	V	T	V	L	V	M	T	T	A	L	L	F	A	V	Y	L	N	Y	I	M	P	E	N
Query Conservation
Alig confidence																																															.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.	.
Template Sequence		T	W	A	A	L	P	L	S	T	A	T	M	W	G	F	F	I	L	C	F	I	A	T	V	T	L	V	N	A	C	S	Y	T	L	A	M	S	T	C	R	E	V	R	D	G	.	.	.	.	.	.	E	E	P	P	L	L	V	R	I	G	W	S	I	L	V	G	I	I	G	I	V	L	L	A	L	G	G	L	K
Template Known Secondary structure					T	S	S	S	T	T																												T	T	S		S	S	S	S	S	.	.	.	.	.	.		S	S		S	T	T																				S	S
Template Predicted Secondary structure																																															.	.	.	.	.	.
Template SS confidence
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.							.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	F	L	V	I	A	S	L	A	T	F	A	T	V	W	V	W	I	M	I	L	L	S	Q	I	A	F	R	R	R	L	P	P	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	I	Q	T	A	I	I	A	G	G	C	P	L	F	F	V	N	I	M	V	T	L	S	F	I	K	D	A	K	Q	N	W	K	D
Template Known Secondary structure																																T
Template Predicted Secondary structure
Template SS confidence
		471	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.