Job Description P0AAE2 Confidence 100.00% Date Thu Jan 5 11:12:41 GMT 2012 Rank 3 Aligned Residues 441 % Identity 9% Template c2jlnA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:mhp1; PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter Resolution 2.85 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence		M	E	S	K	N	K	L	K	R	G	L	S	T	R	H	I	R	F	M	A	L	G	S	A	I	G	T	G	L	F	Y	G	S	A	D	A	I	K	M	A	G	P	.	S	V	L	L	A	Y	I	I	G	G	I	A	A	Y	I	I	M	R	A	L	G	E	M	S	V	H	N	P	A	A	S	S	F	S	R	Y	A
Query Conservation																																												.
Alig confidence																																												.																													.	.
Template Conservation																																																																									.	.
Template Sequence		N	A	P	T	R	Y	A	E	R	S	V	G	P	F	S	L	A	A	I	W	F	A	M	A	I	Q	V	A	I	F	I	A	A	G	Q	M	T	S	S	F	Q	V	W	Q	V	I	V	A	I	A	A	G	C	T	I	A	V	I	L	L	F	F	T	Q	S	A	A	I	R	W	G	.	.	I	N	F	T	V	A	A
Template Known Secondary structure		T	S				G	G	G			B															S	T										T	T	T	S																								T								.	.							T
Template Predicted Secondary structure																																																																									.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.			.	.	90	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	E	N	L	G	P	L	A	G	Y	I	T	G	W	T	Y	C	F	E	I	L	I	V	A	I	A	D	V	T	A	F	G	I	Y	M	G	V	W	F	P	T	V	P	H	W	I	W	V	L	S	V	V	L	I	I	C	A	V	N	L	M	S	V	K	V	F	G	E	L	E	F	W	F	S	F	F	K	V	A	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	M	P	F	G	I	R	G	S	L	I	P	I	T	L	K	A	L	L	S	L	F	W	F	G	F	Q	T	W	L	G	A	L	A	L	D	E	I	T	R	L	L	T	G	F	T	N	L	P	L	W	I	V	I	F	G	A	I	Q	V	V	T	T	F	Y	G	I	T	F	I	R	W	M	N	V	F	A	S	P	V
Template Known Secondary structure		T	T	T	S		T	T	T	T																																																							T	T
Template Predicted Secondary structure
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	I	M	I	V	A	G	F	G	I	I	I	W	G	I	G	N	G	G	Q	P	T	G	I	H	N	L	W	S	N	G	G	F	F	S	N	G	W	L	G	M	V	M	S	L	Q	M	V	M	F	A	Y	G	G	I	E	I	I	G	I	T	A	G	E	A	K	D	P	E	K	S	I	P	R	A	I	N	S	V
Query Conservation
Alig confidence															.	.	.
Template Conservation															.	.	.
Template Sequence		L	L	A	M	G	V	Y	M	V	Y	L	M	L	.	.	.	D	G	A	D	V	S	L	G	E	V	M	S	M	G	G	E	N	P	G	M	P	F	S	T	A	I	M	I	F	V	G	G	W	I	A	V	V	V	S	I	H	D	I	V	K	E	C	K	V	D	P	N	A	S	R	E	G	Q	T	K	A	D	A	R
Template Known Secondary structure															.	.	.				T							T	T				S	S			S											T	T	T					T	T	T					T	T	B				T	T
Template Predicted Secondary structure															.	.	.
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.				.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	M	R	I	L	V	F	Y	V	G	T	L	F	V	I	M	S	I	Y	P	W	N	Q	V	G	T	A	G	S	P	F	V	L	T	F	Q	H	M	G	I	T	F	A	A	S	I	L	N	F	V	V	L	T	A	S	L	S	A	I	N	S	D	V	F	G	V	G	R	M	L	H	G	M	A	E	Q	G	S	A	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	A	T	A	Q	W	L	G	M	V	P	A	S	I	I	F	G	F	I	G	A	A	S	M	V	L	V	G	E	W	N	P	V	I	A	I	T	E	V	V	G	G	V	S	I	P	M	A	I	L	F	Q	V	F	V	L	L	A	T	W	S	T	N	P	A	A	N	L	L	S	P	A	Y	T	L	C	S	T	F	P
Template Known Secondary structure																													S		S											T																				T	T						T											S	T
Template Predicted Secondary structure
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	F	S	K	T	S	R	R	G	I	P	W	V	T	V	L	V	M	T	T	A	L	L	F	A	V	Y	L	N	Y	I	M	P	E	N	V	F	L	V	I	A	S	L	A	T	F	A	T	V	W	V	W	I	M	I	L	L	S	Q	I	A	F	R	R	R	L	P	P	E	E	V	K	A	L	K	F	K	V	P
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.
Template Sequence		R	V	F	T	F	K	.	.	.	.	.	.	.	.	.	.	T	G	V	I	V	S	A	V	V	G	L	L	M	M	P	W	Q	F	A	G	V	L	N	T	F	L	N	L	L	A	S	A	L	G	P	L	A	G	I	M	I	S	D	Y	F	L	V	R	R	R	R	I	S	L	H	D	L	Y	R	T	K	G	I	Y
Template Known Secondary structure		T	T					.	.	.	.	.	.	.	.	.	.													T		G	G	G	T														T	T													T	T	S	T	T								T	B	S	S	S	T	T
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.
Template SS confidence
		332	.	.	.	.	.											.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	V	A	T	T	I	G	G	L	I	F	L	L	F	I	I	G	L	I	G	Y	H	P	D	T	R	I	S	L	Y	V	G	F	A	W	I	V	V	L	L	I	G	W	M	F	K	R	R	H	D	R	Q	L	A	E	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	Y	W	R	G	V	N	W	V	A	L	A	V	Y	A	V	A	L	A	V	S	F	L	T	P	D	L	M	F	V	T	G	L	I	A	A	L	L	L	H	I	P	A	M	R	W	V	A	K	T	F	P	L	F	S	E	A
Template Known Secondary structure			T	B	T	T	B																	T		G	G	G																					T	T	T	S		S			G	G
Template Predicted Secondary structure
Template SS confidence
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.