Job Description P16917 Confidence 67.75% Date Wed Jan 25 15:20:40 GMT 2012 Rank 4 Aligned Residues 217 % Identity 12% Template c1n7dA_ PDB info PDB header:lipid transport Chain: A: PDB Molecule:low-density lipoprotein receptor; PDBTitle: extracellular domain of the ldl receptor Resolution 3.70 Å

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		472	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.		.	550
Predicted Secondary structure																																																																															.
Query SS confidence																																																																															.
Query Sequence		N	Q	L	T	S	A	T	G	P	D	G	L	E	L	R	R	E	Y	D	E	L	G	R	L	I	Q	E	T	A	P	D	G	D	I	T	R	Y	R	Y	D	N	P	H	S	D	L	P	C	A	T	E	D	A	T	G	S	R	K	T	M	T	W	S	R	Y	G	Q	L	L	S	F	T	D	C	S	G	Y	.	V	T
Query Conservation																																																																															.
Alig confidence																																																																															.
Template Conservation
Template Sequence		S	E	Y	T	S	L	I	P	N	L	R	N	V	V	A	L	D	T	E	V	A	S	N	R	I	Y	W	S	D	L	S	Q	R	M	I	C	S	T	Q	L	D	R	A	H	G	S	S	Y	D	T	V	I	S	R	D	I	P	D	G	L	A	V	D	W	I	H	S	N	I	Y	W	T	D	S	V	L	G	T	V	S
Template Known Secondary structure								S				T	T								T	T	T	T							T	T	T	T	S	B					S											B			S											S	S	S	B						T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.
		551	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.			.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.
Query SS confidence																																						.	.
Query Sequence		R	Y	D	H	D	R	F	G	Q	M	T	A	V	H	R	E	E	G	L	S	Q	Y	R	A	Y	D	S	R	G	Q	L	I	A	V	K	D	.	.	T	Q	G	H	E	T	R	Y	E	Y	N	I	A	G	D	L	T	A	V	I	A	P	D	G	S	R	N	G	T	Q	Y	D	A	W	G	K	A	V	R	T	T	Q
Query Conservation																																						.	.
Alig confidence																																						.	.
Template Conservation
Template Sequence		V	A	D	T	K	G	V	K	R	K	T	L	F	R	E	Q	G	S	K	P	R	A	I	V	V	D	P	V	H	G	F	M	Y	W	T	D	W	G	T	P	A	K	I	K	K	G	G	L	N	G	V	D	I	Y	S	L	V	T	E	N	I	Q	W	P	N	G	I	T	L	D	L	L	S	G	R	L	Y	W	V	D
Template Known Secondary structure				B	S	S	S										S	S										S	S	S	S								S	S	S					B			S	S	S							S		S	S		S	S								T	T	T
Template Predicted Secondary structure
Template SS confidence
		479	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.
		629			630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.
Query SS confidence			.	.
Query Sequence		G	.	.	G	L	T	R	S	M	E	Y	D	A	A	G	R	V	I	R	L	T	S	E	N	G	S	H	T	T	F	R	Y	D	V	L	D	R	L	I	Q	E	T	G	F	D	G	R	T	Q	R	Y	H	H	D	L	T	G	K	L	I	R	S
Query Conservation			.	.
Alig confidence			.	.
Template Conservation
Template Sequence		S	K	L	H	S	I	S	S	I	D	V	N	G	G	N	R	K	T	I	L	E	D	E	K	R	L	A	H	P	F	S	L	A	V	F	E	D	K	V	F	W	T	D	I	I	N	E	A	I	F	S	A	N	R	L	T	G	S	D	V	N	L
Template Known Secondary structure		T	T	T	T							S	S	S	S									S	S	S		S	S								T	T							S	T	T	T							T	T	T
Template Predicted Secondary structure
Template SS confidence
		559	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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