 |
Job Description | P0A731 | Confidence | 55.98% | Date | Thu Jan 5 11:04:39 GMT 2012 |
Rank | 40 | Aligned Residues | 84 |
% Identity | 19% | Template | c2yvkA_ |
PDB info |
PDB header:isomerase | Chain: A: PDB Molecule:methylthioribose-1-phosphate isomerase; |
PDBTitle: crystal structure of 5-methylthioribose 1-phosphate2 isomerase product complex from bacillus subtilis
|
Resolution | 2.40 Å |
|
 |
  |   |
27 | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
. | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|  |  | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | S | W | V | E | R | H | Q | P | L | L | E | Q | H | V | L | Y | A | T | G | T | . |
. |
. |
. |
. |
. |
. |
. |
. |
T | G | N | L | I | S | R | A | T | G | M | N | V | N | A | M | L | S | G | P | M | G | G | D | Q | Q | V | G | A | L | I | S | E | G | K | I | D | V | L | I | F | F | W | D | P | L | N | A | V | P |
Query Conservation |   |
|   |   |
|   |   |   |   |   |
|
|   |
|   |   |
|   |
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|   |   |
|   |
|   |   |
|
|   |
|   |   |   |   |
|
|
|   |
|
|
|   |
|
|   |   |   |
|   |   |
|   |
|
|   |
|
|
|
|   |
|
|   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|   |   |
|   |   |   |
|
|   |   |   |
|   |
|   |
|
|
|
|   |   |
|
|   |
|
|
|
|   |
|
|   |   |   | . |
|
|   |
|
|
|
|   | . | . | . | . | . | . |
|
|
|   |   |   |   |
|   |   |   |   |
|
|   |
|
|
|
|
|
|   |
|   |   |
|
|
Template Sequence |   |
L | A | P | F | Y | L | A | K | Q | K | D | L | G | L | H | I | Y | A | C | E | T | R | P | V | L | Q | G | S | R | L | T | A | W | E | L | M | Q | G | . |
G | I | D | V | T | L | I | T | . |
. |
. |
. |
. |
. |
D | S | M | A | A | H | T | M | K | E | K | Q | I | S | A | V | I | V | G | A | D | R | I | A | K | N | G |
Template Known Secondary structure |   |
T |  |  |  |  |  |  |  |  | T | T |
|
|
|  |  |  |  |  |
|
| T | T | T | T |  |  |  |  | T |  |  |  |  |  |  | T | T | . | T |
|  |  |  |  |  |
| . | . | . | . | . | . | G | G | G |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |
|
| S |  |  |  | T | T |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
| . |
|
|
|  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
|  |  |  |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
174 | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | |
. | . | . | . | . | . | . | . | |
|
|
|
|
|
220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . |
  |
  |   |
98 | . | 100 | . | |
|
|
. | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |
Query SS confidence |   |
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
H | D | P | D | . |
. |
. |
V | K | A | L | L | R | L | A | T | V | W | N | I | P | V | A |
Query Conservation |   |
|   |   |
| . | . | . |   |   |
|
|   |
|   |
|   |   |   |   |
|
|   |
|
Alig confidence |   |
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |
|
|
|
|
|   |   |
|
|
|   |
|
|   |   |   |
|
|
|
|
Template Sequence |   |
D | T | A | N | K | I | G | T | Y | G | L | A | I | L | A | N | A | F | D | I | P | F | F |
Template Known Secondary structure |   |
|  |  |  |  | T | T |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
247 | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|