Job Description P45464 Confidence 92.36% Date Thu Jan 5 12:02:41 GMT 2012 Rank 104 Aligned Residues 261 % Identity 11% Template c3rotA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:abc sugar transporter, periplasmic sugar binding protein; PDBTitle: crystal structure of abc sugar transporter (periplasmic sugar binding2 protein) from legionella pneumophila Resolution 1.91 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	A	L	L	L	P	L	N	G	Q	A	A	V	F	G	R	T	I	Q	Q	G	F	E	A	A	K	N	I	G	T	Q	P	V	A	A	Q	V	A	A	A	P	A	A	D	V	A	E	Q	P	Q	P	Q	T	V	D	G	V	A	S	P	A	Q	A	S	V	S	D	L	T	G	E	Q	P	A	A	Q	P	V	P
Query Conservation
Alig confidence													.	.																		.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.																		.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	Y	Y	L	I	T	H	G	S	Q	D	.	.	P	Y	W	T	S	L	F	Q	G	A	K	K	A	A	E	E	L	.	.	.	.	.	.	.	K	V	D	L	Q	I	L	A	P	P	G	A	N	D	V	P	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								S				S	.	.																		.	.	.	.	.	.	.	T									S	S	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure													.	.																		.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.			.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.								.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.		.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.			.	.	400	.	.	.	.	.	.	.	.	.	410		.	.	.
Predicted Secondary structure																																														.																	.	.														.
Query SS confidence																																														.																	.	.														.
Query Sequence		V	S	A	P	A	T	S	T	A	A	V	S	A	P	A	N	P	S	A	E	L	K	I	Y	D	T	S	S	Q	P	L	S	Q	I	L	S	Q	V	Q	Q	D	G	A	S	.	I	V	V	G	P	L	L	K	N	N	V	E	E	L	L	K	.	.	S	N	T	P	L	N	V	L	A	L	N	Q	P	.	E	N	I
Query Conservation																																														.																	.	.														.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.																	.	.														.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	V	Q	F	I	E	S	A	L	A	T	Y	P	S	G	I	A	T	T	I	P	S	D	T	A	F	S	K	S	L	Q	R	A	N	K	L	N	I	P	V	I	A	V	D	T	R	P	K	D	K
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											T			S									S	S	T	T											T							S				S		T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.					450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.
Query SS confidence																																						.	.	.	.
Query Sequence		E	N	R	V	N	I	C	Y	F	A	L	S	P	E	D	E	A	R	D	A	A	R	H	I	R	D	Q	G	K	Q	A	P	L	V	L	I	.	.	.	.	P	R	S	S	L	G	D	R	V	A	N	A	F	A	Q	E	W	Q	K	L	G	G	G	T	V	L	Q	Q	K	F	G	S	T	S	E	L	R	A	G	V
Query Conservation																																						.	.	.	.
Alig confidence																																						.	.	.	.
Template Conservation
Template Sequence		T	K	N	P	Y	L	V	F	L	G	S	D	N	L	L	A	G	K	K	L	G	E	K	A	L	E	L	T	P	S	A	K	R	A	L	V	L	N	P	Q	P	G	H	I	G	L	E	K	R	A	Y	G	I	K	T	I	L	Q	D	K	G	I	F	F	E	E	L	D	V	G	T	D	P	N	Q	V	Q	S	R	V
Template Known Secondary structure		T	T	S			S																							T	T									S		T	T																		T	T										S
Template Predicted Secondary structure
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.		.	.	560	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																						.
Query SS confidence																																																																						.
Query Sequence		N	G	G	S	G	I	A	L	T	G	S	P	I	T	L	R	A	T	T	D	S	G	M	T	T	N	N	P	T	L	Q	T	T	P	T	D	D	Q	F	T	N	N	G	G	R	V	D	A	V	Y	I	V	A	T	P	G	E	I	A	F	I	K	P	M	I	A	M	R	.	N	G	S	Q	S	G	A	T	L	Y	A
Query Conservation																																																																						.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	S	Y	F	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	H	P	E	T	N	I	I	F	C	L	T	S	Q	A	L	D	P	L	G	Q	X	L	L	H	P	D	R	Y	D	F	N	Y	Q	P	Q	V	Y	S
Template Known Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T							S	S													S					T
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		199	200	.	.	.																																					.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		569	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	R	S	A	Q	G	T	A	G	P	D	F	R	L	E	M	E	G	L	Q	Y	S	E	I	P	M	L	A	G	G	N	L	P	L	M	Q	Q	A	L	S	A	V	N	N	D	Y	S	L	A	R	M	Y	A	M	G	V	D	A	W	S	L	A	N	H	F	S	Q	M	R	Q	V	Q	G	F	E	I	N	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	D	K	T	P	N	T	V	S	L	I	H	K	K	L	V	N	Y	V	X	D	Q	Q	P	F	L	X	G	Y	L	S	I	T	Q	L	V	L	X	N	R	Y	Q	L	N	P	V	N	I	N	T	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																														243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions