Job Description P45464 Confidence 78.11% Date Thu Jan 5 12:02:41 GMT 2012 Rank 129 Aligned Residues 166 % Identity 10% Template c3qkyA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:outer membrane assembly lipoprotein yfio; PDBTitle: crystal structure of rhodothermus marinus bamd Resolution 2.15 Å

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		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure																																.																																		.
Query SS confidence																																.																																		.
Query Sequence		I	N	W	Q	L	L	A	I	R	A	L	V	K	E	G	K	T	G	Q	A	V	E	L	F	N	Q	L	P	Q	E	.	L	N	D	A	Q	R	R	E	K	T	L	L	A	V	E	I	K	L	A	Q	K	D	F	A	G	A	Q	N	L	L	A	K	I	.	T	P	A	D	L	E	Q	N	Q	Q	A	R	Y	W	Q
Query Conservation																																.																																		.
Alig confidence																																.																																		.
Template Conservation
Template Sequence		P	Q	E	A	F	E	R	A	M	E	F	Y	N	Q	G	K	Y	D	R	A	I	E	Y	F	K	A	V	F	T	Y	G	R	T	H	E	W	A	A	D	A	Q	F	Y	L	A	R	A	Y	Y	Q	N	K	E	Y	L	L	A	A	S	E	Y	E	R	F	I	Q	I	Y	Q	I	D	P	R	V	P	Q	A	E	Y	E
Template Known Secondary structure															T	T													G	G	G		S		S	T	T															T	T																	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	I	D	A	S	Q	G	R	P	S	I	D	L	L	R	A	L	I	A	Q	E	P	L	L	G	A	K	E	K	Q	Q	N	I	D	A	T	W	Q	A	L	S	S	M	T	Q	E	Q	A	N	T	L	V	I	N	A	D	E	N	I	L	Q	G	W	L	D	L	Q	R	V	W	F	D	N	R	N	D	P	D	M
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.
Template Sequence		R	A	M	C	Y	Y	K	L	S	P	P	Y	.	.	.	.	.	.	.	.	E	L	D	Q	T	D	T	R	K	A	I	E	A	F	Q	L	F	I	D	R	Y	P	N	H	E	L	V	D	D	A	T	Q	K	I	R	E	L	R	A	K	L	A	R	K	Q	Y	E	A	A	R	L	Y	E	R	R	E	L	Y	E	A
Template Known Secondary structure													T	.	.	.	.	.	.	.	.	T	S																				T	T		T	T																													T	T
Template Predicted Secondary structure														.	.	.	.	.	.	.	.
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.									.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	A	G	I	A	D	W	Q	K	R	Y	P	N	N	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	A	V	T	Y	E	A	V	F	D	A	Y	P	D	T	P
Template Known Secondary structure														T	T	S	T
Template Predicted Secondary structure
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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