Return to main results Retrieve Phyre Job Id

Job DescriptionP45464
Confidence99.96%DateThu Jan 5 12:02:41 GMT 2012
Rank30Aligned Residues308
% Identity12%Templatec3p3wC_
PDB info PDB header:transport proteinChain: C: PDB Molecule:glutamate receptor 3; PDBTitle: structure of a dimeric glua3 n-terminal domain (ntd) at 4.2 a2 resolution
Resolution4.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   257..260.........270.........280.........290.........300...... ...310.........320.........330.....
Predicted Secondary structure 
















.
















Query SS confidence 

















































.




























Query Sequence  NKIALLLPLNGQAAVFGRTIQQGFEAAKNIGTQPVAAQVAAAPAADVAEQ. PQPQTVDGVASPAQASVSDLTGEQPAAQP
Query Conservation   









  
  
 

  
   
    
  

  
        
  .                             
Alig confidence 











......



















..









.






......................
Template Conservation 
 

 

     ......    
   

  

     
..                
 ......................
Template Sequence  ISIGGLFMRNTV. . . . . . QEHSAFRFAVQLYNTNQNPF. . HLNYHVDHLDSSNSFSVT. . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 
SS
......S




..

SS
......................
Template Predicted Secondary structure 



......




..




......................
Template SS confidence 















































































   6...10....... ..20.........30....... ..40.........50.....
 
   336...340.........350.........360.........370.........380.........390....... ..400.........410...
Predicted Secondary structure 


































..









Query SS confidence 





























































. .















Query Sequence  VPVSAPATSTAAVSAPANPSAELKIYDTSSQPLSQILSQVQQDGASIVVGPLLKNNVEELLK. . SNTPLNVLALNQPENI
Query Conservation                        
   

               

  




 
  
 

  ..    






     
Alig confidence  ..................................



























..















Template Conservation  .................................. 
   
    
  



  
     
        

 

       
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . NAFCSQFSRGVYAIFGFYDQMSMNTLTSFCGALHTSFVTPSFPTDA
Template Known Secondary structure  ..................................TT
S



TTTTT

SS


SS
Template Predicted Secondary structure  ..................................















Template SS confidence 















































































   60.........70.........80.........90.........100.....
 
   414.....420.........430.........440.........450.........460.........470.........480.. .......490..
Predicted Secondary structure 




















.

Query SS confidence 




































































.









Query Sequence  ENRVNICYFALSPEDEARDAARHIRDQGKQAPLVLIPRSSLGDRVANAFAQEWQKLGGGTVLQQKFGST. SELRAGVNGG
Query Conservation        
 
 


 


   
      
 
  


      
   
 

       

 

    
   . 
    
   
Alig confidence  .










...





















































.









Template Conservation  .           ...   

        
  
 

                                    
        
Template Sequence  . DVQFVIQMRPA. . . LKGAILSLLSYYKWEKFVYLYDTERGFSVLQAIMEAAVQNNWQVTARSVGNIKDVQEFRRIIEEM
Template Known Secondary structure  .

SS
S

...TT


SSS
STTTT

SS

STT
Template Predicted Secondary structure  .




...














Template SS confidence 















































































   106...110...... ...120.........130.........140.........150.........160.........170.........180.
 
   493......500.........510.........520.........530.........540.........550.........560.........570..
Predicted Secondary structure 














































Query SS confidence 















































































Query Sequence  SGIALTGSPITLRATTDSGMTTNNPTLQTTPTDDQFTNNGGRVDAVYIVATPGEIAFIKPMIAMRNGSQSGATLYASSRS
Query Conservation                                           
 


 
         
 
 
          
  
 
  
Alig confidence 




......................................














...


















Template Conservation       ......................................  


         
...   
   
           
Template Sequence  DRRQE. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . KRYLIDCEVERINTI. . . LEQVKHSRGYHYMLANLGF
Template Known Secondary structure  TTTT
......................................


...T



TT


S

Template Predicted Secondary structure 



......................................


...








Template SS confidence 















































































   182.... ...190.........200. ........210.........220
 
   573......580.........590.........600.........610......... 620.........630....
Predicted Secondary structure 





















..................
Query SS confidence 














































. . . . . . . . . .














. . . . . . . .
Query Sequence  AQGTAGPDFRLEMEGLQYSEIPMLAGGNLPLMQQALSAVNNDYSLAR. . . . . . . . . . MYAMGVDAWSLANHF. . . . . . . .
Query Conservation              
 

 
   
                        
..........
 
 



  
   
........
Alig confidence 


















....























..........














........
Template Conservation                     ....           
                           



   
 

       
Template Sequence  TDILLERVMHGGANITGFQ. . . . IVNNENPMVQQFIQRWVRLDEREFPEAKNAPLKYTSALTHDAILVIAEAFRYLRRQR
Template Known Secondary structure  TTS

TTT
....


TT
SSS
TTTSTTSSSS


TT
Template Predicted Secondary structure 






....

















Template SS confidence 















































































   225....230.........240... ......250.........260.........270.........280.........290.........300
 
   635....640.........650......... 660.........670.......
Predicted Secondary structure  ................














.






Query SS confidence  . . . . . . . . . . . . . . . .
























.

















Query Sequence  . . . . . . . . . . . . . . . . SQMRQVQGFEINGNTGSLTANPDCV. INRNLSWLQYQQGQVVPV
Query Conservation  ................  
         
 

 

 
  
 .
 
 
       
  

 
Alig confidence  ................
























.

















Template Conservation                
  
   
    
 
 

 
 

  
 
      
  
       
Template Sequence  VDVSGDCLANPAVQGIDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKVSGSRKA
Template Known Secondary structure 







SSS



TT

TT
TTS
S


SS
Template Predicted Secondary structure 































Template SS confidence 



























































   301........310.........320.........330.........340.........350.........360
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions