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Job DescriptionP45464
Confidence98.02%DateThu Jan 5 12:02:41 GMT 2012
Rank54Aligned Residues204
% Identity16%Templatec3o1hB_
PDB info PDB header:signaling proteinChain: B: PDB Molecule:periplasmic protein tort; PDBTitle: crystal structure of the tors sensor domain - tort complex in the2 presence of tmao
Resolution3.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   257..260.........270.........280.........290.........300.........310.........320.........330......
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Query Sequence  NKIALLLPLNGQAAVFGRTIQQGFEAAKNIGTQPVAAQVAAAPAADVAEQPQPQTVDGVASPAQASVSDLTGEQPAAQPV
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Template Sequence  EKICAIYPHLK. . DSYWLSVNYGMVSEAEKQ. . . . . . . GVNLRVLEAGGYPNKSRQ. . . . . . . . . . . . . . . . . . . . . . . .
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SSTT
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   31........40. ........50......... 60.........70.......
 
   337..340.........350.........360.........370.........380... ......390....... ..400.........410 .
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Query Sequence  PVSAPATSTAAVSAPANPSAELKIYDTSSQPLSQILSQVQQDGASIV. VGPLLKNNVEELLK. . SNTPLNVLALNQP. . E
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . EQQLALCTQWGANAIILGTVDPHAYEHNLKSWVGNTPVFATVNQLDLD
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S

SSTTTTTTTTTT


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   78.80.........90.........100.........110.........120.....
 
   412.......420.........430.........440 .........450.........460.........470.........480........
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Query Sequence  NIENRVNICYFALSPEDEARDAARHIRDQ. . . GKQAPLVLIPRSSLGDRVANAFAQEWQKLGGGTVLQQKFGSTSELRAG
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Template Sequence  EEQSTLLKGEVGVDWYWMGYEAGKYLAERHPKGSGKTNIALLLGPRTKPVTTGFYEAIKNSDIHIVDSFWADNDKELQRN
Template Known Secondary structure  TTTTTS


TS
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   126...130.........140.........150.........160.........170.........180.........190.........200.....
 
   489490.........500.........510.........520.....
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Query Sequence  VNGGSGIALTGSPITLRATTDSGMTTNNPTLQTTPTD
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Template Sequence  LVQRVIDMGNIDYIVGSAVAIEAAISELRSADKTHDI
Template Known Secondary structure  T


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   210.........220.........230.........240......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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