Return to main results Retrieve Phyre Job Id

Job DescriptionP45464
Confidence73.26%DateThu Jan 5 12:02:41 GMT 2012
Rank136Aligned Residues182
% Identity15%Templatec3mkrA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:coatomer subunit epsilon; PDBTitle: crystal structure of yeast alpha/epsilon-cop subcomplex of the copi2 vesicular coat
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   48.50.........60.........70.........80.........90.........100.........110.........120.......
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Query Sequence  AFYLQQMQQSSDDTRINWQLLAIRALVKEGKTGQAVELFNQLPQELNDAQRREKTLLAVEIKLAQKDFAGAQNLLAKITP
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Template Sequence  AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ. . . . . . . GDSLECMAMTVQILLKLDRLDLARKELKKMQD
Template Known Secondary structure  S



S
TT
TT.......

STT
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   102.......110.........120.........130.........140.. .......150.........160.........170....
 
   128.130.........140.........150.........160.........170.........180.........190 .........200.....
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Query Sequence  ADLEQNQQARYWQAKIDASQGRPSIDLLRALIAQEPLLGAKEKQQNIDATWQALSSMTQEQAN. . TLVINADENILQGWL
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Template Sequence  QDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI
Template Known Secondary structure 
TT

TTS


TT

TT
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   175....180.........190.........200.........210.........220.........230.........240.........250....
 
   206...210.........220.........230......
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Query Sequence  DLQRVWFDNRNDPDMMKAGIADWQKRYPNNP
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Template Sequence  NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP
Template Known Secondary structure  TT


TT
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   255....260.........270.........280.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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