Job Description P45464 Confidence 100.00% Date Thu Jan 5 12:02:41 GMT 2012 Rank 17 Aligned Residues 323 % Identity 16% Template c3lopA_ PDB info PDB header:substrate binding protein Chain: A: PDB Molecule:substrate binding periplasmic protein; PDBTitle: crystal structure of substrate-binding periplasmic protein2 (pbp) from ralstonia solanacearum Resolution 1.55 Å

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		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	K	I	A	L	L	L	P	L	N	G	Q	A	A	V	F	G	R	T	I	Q	Q	G	F	E	A	A	K	N	I	G	T	Q	P	V	A	A	Q	V	A	A	A	P	A	A	D	V	A	E	Q	P	Q	P	Q	T	V	D	G	V	A	S	P	A	Q	A	S	V	S	D	L	T	G	E	Q	P	A	A	Q	P	V
Query Conservation
Alig confidence																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	S	V	I	Q	S	L	P	L	S	G	S	Q	A	V	T	G	R	A	L	N	A	G	A	R	L	Y	F	D	W	L	N	L	N	G	G	I	N	G	E	T	I	R	L	V	A	R	D	D	E	Q	K	I	E	Q	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										S	S	S	T	T																					T	T	T	B	T	T	B										T	T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.					.	.	400	.	.	.	.	.	.	.	.	.	410		.
Predicted Secondary structure																																																															.	.	.	.														.
Query SS confidence																																																															.	.	.	.														.
Query Sequence		P	V	S	A	P	A	T	S	T	A	A	V	S	A	P	A	N	P	S	A	E	L	K	I	Y	D	T	S	S	Q	P	L	S	Q	I	L	S	Q	V	Q	Q	D	G	A	S	I	V	V	G	P	L	L	K	N	N	V	E	E	L	L	K	.	.	.	.	S	N	T	P	L	N	V	L	A	L	N	Q	P	.	E
Query Conservation																																																															.	.	.	.														.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.														.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	R	N	V	R	D	X	A	R	V	D	N	P	V	A	L	L	T	V	V	G	T	A	N	V	E	A	L	X	R	E	G	V	L	A	E	A	R	L	P	L	V	G	P	A	T	G	A	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											S																				T	T						T					S		S				G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																	92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
		412	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.		.	.	.	.	.	.	.	490
Predicted Secondary structure																																																																									.
Query SS confidence																																																																									.
Query Sequence		N	I	E	N	R	V	N	I	C	Y	F	A	L	S	P	E	D	E	A	R	D	A	A	R	H	I	R	D	Q	G	K	Q	A	P	L	V	L	I	P	R	S	S	L	G	D	R	V	A	N	A	F	A	Q	E	W	Q	K	L	G	G	G	T	V	L	Q	Q	K	F	G	S	T	.	S	E	L	R	A	G	V	N
Query Conservation																																																																									.
Alig confidence																																																																									.
Template Conservation
Template Sequence		S	X	T	T	D	P	L	V	F	P	I	K	A	S	Y	Q	Q	E	I	D	K	X	I	T	A	L	V	T	I	G	V	T	R	I	G	V	L	Y	Q	E	D	A	L	G	K	E	A	I	T	G	V	E	R	T	L	K	A	H	A	L	A	I	T	A	X	A	S	Y	P	R	N	T	A	N	V	G	P	A	V	D
Template Known Secondary structure		G	G	G	S		T	T					S																	T	T										T	T																T	T	T				S							T	T	S
Template Predicted Secondary structure
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		491	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	S	G	I	A	L	T	G	S	P	I	T	L	R	A	T	T	D	S	G	M	T	T	N	N	P	T	L	Q	T	T	P	T	D	D	Q	F	T	N	N	G	G	R	V	D	A	V	Y	I	V	A	T	P	G	E	I	A	F	I	K	P	M	I	A	M	R	N	G	S	Q	S	G	A	T	L	Y	A	S	S
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Template Sequence		K	L	L	A	A	D	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	A	I	F	L	G	A	T	A	E	P	A	A	Q	F	V	R	Q	Y	R	A	R	G	G	.	.	.	E	A	Q	L	L	G	L	S
Template Known Secondary structure						S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S						S															T	T		.	.	.								T
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Template SS confidence
		221	.	.	.	.	.	.																																							.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.				.	.	.	.	.	.	.	.
		571	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.			.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.					620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.
Predicted Secondary structure																								.	.																												.	.	.	.																		.	.	.	.	.	.	.	.
Query SS confidence																								.	.																												.	.	.	.																		.	.	.	.	.	.	.	.
Query Sequence		R	S	A	Q	G	T	A	G	P	D	F	R	L	E	M	E	G	L	Q	Y	S	E	.	.	I	P	M	L	A	G	G	N	L	P	L	M	Q	Q	A	L	S	A	V	N	N	D	Y	S	L	A	R	.	.	.	.	M	Y	A	M	G	V	D	A	W	S	L	A	N	H	F	S	Q	.	.	.	.	.	.	.	.
Query Conservation																								.	.																												.	.	.	.																		.	.	.	.	.	.	.	.
Alig confidence																								.	.																												.	.	.	.																		.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	I	D	P	G	I	L	Q	K	V	A	G	L	D	A	V	R	G	Y	S	L	A	L	V	X	P	N	P	G	K	S	V	N	P	V	I	R	E	F	N	R	A	R	A	A	V	G	A	K	D	V	D	L	S	F	R	A	V	E	G	F	V	A	A	K	V	L	A	E	A	I	R	R	A	G	P	K	P	T	R
Template Known Secondary structure		T	S															T	T							S			T	T		T	T	S														T		T	T																										S	S
Template Predicted Secondary structure
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
					637	.	.	640	.	.	.	.	.	.	.	.	.	650			.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.			670	.	.	.	.	.
Predicted Secondary structure		.	.	.															.	.																				.	.
Query SS confidence		.	.	.															.	.																				.	.
Query Sequence		.	.	.	M	R	Q	V	Q	G	F	E	I	N	G	N	T	G	.	.	S	L	T	A	N	P	D	C	V	I	N	R	N	L	S	W	L	Q	Y	.	.	Q	Q	G	Q	V	V
Query Conservation		.	.	.															.	.																				.	.
Alig confidence		.	.	.															.	.																				.	.
Template Conservation
Template Sequence		E	Q	V	R	H	A	L	T	E	L	R	D	Y	D	V	G	G	G	F	T	V	D	F	T	D	R	S	R	P	G	S	H	Y	I	E	L	G	V	V	G	P	N	G	L	V	I
Template Known Secondary structure										T						S	S	T	T						S	S	T	T	S		S											T	T	S
Template Predicted Secondary structure
Template SS confidence
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.