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Job DescriptionP45464
Confidence100.00%DateThu Jan 5 12:02:41 GMT 2012
Rank11Aligned Residues327
% Identity13%Templatec3lkbB_
PDB info PDB header:transport proteinChain: B: PDB Molecule:probable branched-chain amino acid abc PDBTitle: crystal structure of a branched chain amino acid abc2 transporter from thermus thermophilus with bound valine
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   254.....260.........270.........280.........290.........300.........310.........320.........330...
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Query Sequence  ASTNKIALLLPLNGQAAVFGRTIQQGFEAAKNIGTQPVAAQVAAAPAADVAEQPQPQTVDGVASPAQASVSDLTGEQPAA
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Template Sequence  QQQVTLFWSGAITGPTSDAGAPYGAAVEDYCKWANERKLVPGVVFNCVVRDDQYNNANTQ. . . . . . . . . . . . . . . . . . . .
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SSSTTTSSTT
TT
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   5....10.........20.........30.........40.........50.........60....
 
   334.....340.........350.........360.........370.........380.........390....... ..400.........410.
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Query Sequence  QPVPVSAPATSTAAVSAPANPSAELKIYDTSSQPLSQILSQVQQDGASIVVGPLLKNNVEELLK. . SNTPLNVLALNQPE
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RFFEEAVDRFKIPVFLSYATGANLQLKPLIQELRIPTIPASMHI
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S


T

S


G
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   65....70.........80.........90.........100........
 
   412. ......420.........430......... 440.........450.........460.........470.........480.. ....
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Query Sequence  NI. . . ENRVNICYFALSPEDEARDAARHIRD. QGKQAPLVLIPRSSLGDRVANAFAQEWQKLGGGTVLQQKFGST. SELR
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Template Sequence  ELIDPPNNDYIFLPTTSYSEQVVALLEYIAREKKGAKVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGSGNLDNT
Template Known Secondary structure  GGTSSSS
TTB


STT

SSTTT


TT



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   109110.........120.........130.........140.........150.........160.........170.........180........
 
   487..490.........500.........510.........520.........530.........540.........550.........560......
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Query Sequence  AGVNGGSGIALTGSPITLRATTDSGMTTNNPTLQTTPTDDQFTNNGGRVDAVYIVATPGEIAFIKPMIAMRNGSQSGATL
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Template Sequence  ALLKRFEQAGV. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . EYVVHQNVAGPVANILKDAKRLGL. . . KMRH
Template Known Secondary structure  TT
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S
TT
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   189190......... 200.........210.........220... ....
 
   567..570.........580.........590.........600.........610......... 620.........630......
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Query Sequence  YASSRSAQGTAGPDFRLEMEGLQYSEIPMLAGGNLPLMQQALSAVNNDYSLAR. . . . . . MYAMGVDAWSLANHFSQ. . . .
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Template Sequence  LGAHYTGGPDLIALAGDAAEGFLWAT. SFYMAHEDTPGIRLQKEIGRKYGRPENFIESVNYTNGMLAAAIAVEAIRRAQE
Template Known Secondary structure 
GGG
SGGGGTT
.SB

TTS

TT

T
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   228.230.........240.........250... ......260.........270.........280.........290.........300......
 
   637..640.........650......... 660.........670........
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . MRQVQGFEINGNTGSLTANPDCV. INRNLSWLQYQQGQVVPVS
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Template Sequence  RFKRITNETVYQAIVGMNGPNAFKPGFAVSTKQGVEIDFTKSEHTGAEGLRILEAKGGRFVPVT
Template Known Secondary structure  S

ST
SGGG
B

SSB


SSS
SB


SS



BTT
S
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   307..310.........320.........330.........340.........350.........360.........370
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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