Job Description P45464 Confidence 100.00% Date Thu Jan 5 12:02:41 GMT 2012 Rank 15 Aligned Residues 322 % Identity 13% Template c3ip5A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:abc transporter, substrate binding protein (amino acid); PDBTitle: structure of atu2422-gaba receptor in complex with alanine Resolution 1.35 Å

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		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	K	I	A	L	L	L	P	L	N	G	Q	A	A	V	F	G	R	T	I	Q	Q	G	F	E	A	A	K	N	I	G	T	Q	P	V	A	A	Q	V	A	A	A	P	A	A	D	V	A	E	Q	P	Q	P	Q	T	V	D	G	V	A	S	P	A	Q	A	S	V	S	D	L	T	G	E	Q	P	A	A	Q	P	V
Query Conservation
Alig confidence																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	V	I	A	V	G	A	P	L	T	G	P	N	A	A	F	G	A	Q	I	Q	K	G	A	E	Q	A	A	K	D	I	N	A	A	G	G	I	N	G	E	Q	I	K	I	V	L	G	D	D	V	S	D	P	K	Q	G	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											S	S	T	T																					T	T		B	T	T	B										T	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.			.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure																																																															.	.																	.
Query SS confidence																																																															.	.																	.
Query Sequence		P	V	S	A	P	A	T	S	T	A	A	V	S	A	P	A	N	P	S	A	E	L	K	I	Y	D	T	S	S	Q	P	L	S	Q	I	L	S	Q	V	Q	Q	D	G	A	S	I	V	V	G	P	L	L	K	N	N	V	E	E	L	L	K	.	.	S	N	T	P	L	N	V	L	A	L	N	Q	P	E	N	I	.
Query Conservation																																																															.	.																	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.																	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	V	A	N	K	F	V	A	D	G	V	K	F	V	V	G	H	F	N	S	G	V	S	I	P	A	S	E	V	Y	A	E	N	G	I	L	E	I	T	P	A	A	T	N	P	V	F
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									T	T								S	S														T	T						S	S				G	G	G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																			60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
				414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.		440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.		.	.	.	.	.	.	.
Predicted Secondary structure		.	.																											.																																												.
Query SS confidence		.	.																											.																																												.
Query Sequence		.	.	E	N	R	V	N	I	C	Y	F	A	L	S	P	E	D	E	A	R	D	A	A	R	H	I	R	D	.	Q	G	K	Q	A	P	L	V	L	I	P	R	S	S	L	G	D	R	V	A	N	A	F	A	Q	E	W	Q	K	L	G	G	G	T	V	L	Q	Q	K	F	G	S	T	.	S	E	L	R	A	G	V
Query Conservation		.	.																											.																																												.
Alig confidence		.	.																											.																																												.
Template Conservation
Template Sequence		T	E	R	G	L	W	N	T	F	R	T	C	G	R	D	D	Q	Q	G	G	I	A	G	K	Y	L	A	D	H	F	K	D	A	K	V	A	I	I	H	D	K	T	P	Y	G	Q	G	L	A	D	E	T	K	K	A	A	N	A	A	G	V	T	E	V	M	Y	E	G	V	N	V	G	D	K	D	F	S	A	L	I
Template Known Secondary structure		G	S	S			T	T				S	S																			T	T									S	S																	T	T				S							T	T
Template Predicted Secondary structure
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	G	S	G	I	A	L	T	G	S	P	I	T	L	R	A	T	T	D	S	G	M	T	T	N	N	P	T	L	Q	T	T	P	T	D	D	Q	F	T	N	N	G	G	R	V	D	A	V	Y	I	V	A	T	P	G	E	I	A	F	I	K	P	M	I	A	M	R	N	G	S	Q	S	G	A	T	L	Y	A	S
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Template Sequence		S	K	M	K	E	A	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	I	I	Y	W	G	G	L	H	T	E	A	G	L	I	I	R	Q	A	A	D	Q	G	L	.	.	.	K	A	K	L	V	S	G
Template Known Secondary structure							T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							S															T	T		.	.	.
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Template SS confidence
		187	.	.	190	.	.	.	.																																							.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.				.	220	.	.	.	.	.
		570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.		620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.											.	.
Predicted Secondary structure																																																				.																		.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.																		.	.	.	.	.	.	.	.	.	.
Query Sequence		S	R	S	A	Q	G	T	A	G	P	D	F	R	L	E	M	E	G	L	Q	Y	S	E	I	P	M	L	A	G	G	N	L	P	L	M	Q	Q	A	L	S	A	V	N	N	D	Y	S	L	A	R	.	M	Y	A	M	G	V	D	A	W	S	L	A	N	H	F	S	Q	.	.	.	.	.	.	.	.	.	.	M	R
Query Conservation																																																				.																		.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.																										.																		.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.
Template Sequence		D	G	I	V	S	N	E	L	A	S	I	A	G	D	A	V	E	G	T	L	N	T	F	.	.	G	P	D	P	T	L	R	P	E	N	K	E	L	V	E	K	F	K	A	A	G	F	N	P	E	A	Y	T	L	Y	S	Y	A	A	M	Q	A	I	A	G	A	A	K	A	A	G	S	V	E	P	E	K	V	A	E
Template Known Secondary structure		G	G	G		S	T							G	G	G	G	T	T						.	.	S			G	G	G		G	G	G										T	T					T	T																			T
Template Predicted Secondary structure																									.	.
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.			.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		639	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660		.	.	.	.	.	.	.	.	.	670				.	.	.	.	.	.	.
Predicted Secondary structure																								.											.	.	.
Query SS confidence																								.											.	.	.
Query Sequence		Q	V	Q	G	F	E	I	N	G	N	T	G	S	L	T	A	N	P	D	C	V	I	.	N	R	N	L	S	W	L	Q	Y	Q	.	.	.	Q	G	Q	V	V	P	V
Query Conservation																								.											.	.	.
Alig confidence																								.											.	.	.
Template Conservation
Template Sequence		A	L	K	K	G	S	F	P	T	A	L	G	E	I	S	F	D	E	K	G	D	P	K	L	P	G	Y	V	M	Y	E	W	K	K	G	P	D	G	K	F	T	Y	I
Template Known Secondary structure								B			T	T	S	S	B		B		T	T	S		B														T	T	S
Template Predicted Secondary structure
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.