Job Description P45464 Confidence 100.00% Date Thu Jan 5 12:02:41 GMT 2012 Rank 14 Aligned Residues 327 % Identity 14% Template c3i45A_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:twin-arginine translocation pathway signal protein; PDBTitle: crystal structure of putative twin-arginine translocation pathway2 signal protein from rhodospirillum rubrum atcc 11170 Resolution 1.36 Å

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		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.		.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence		S	T	N	K	I	A	L	L	L	P	L	N	G	Q	A	A	V	F	G	R	T	I	Q	Q	G	F	E	A	A	K	N	I	G	T	Q	P	V	A	.	A	Q	V	A	A	A	P	A	A	D	V	A	E	Q	P	Q	P	Q	T	V	D	G	V	A	S	P	A	Q	A	S	V	S	D	L	T	G	E	Q	P	A	A
Query Conservation																																								.
Alig confidence																		.																						.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	A	I	R	I	G	E	I	N	S	Y	S	Q	I	P	A	.	F	T	L	P	Y	R	N	G	W	Q	L	A	V	E	Q	I	N	A	A	G	G	L	L	G	G	R	P	L	E	V	I	S	R	D	D	G	G	D	P	G	K	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure												T	T	T				.																			T	T		B	T	T	T	B										T	T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																		.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.			.	.	400	.	.	.	.	.	.	.	.	.	410
Predicted Secondary structure																																																																		.	.														.
Query SS confidence																																																																		.	.														.
Query Sequence		Q	P	V	P	V	S	A	P	A	T	S	T	A	A	V	S	A	P	A	N	P	S	A	E	L	K	I	Y	D	T	S	S	Q	P	L	S	Q	I	L	S	Q	V	Q	Q	D	G	A	S	I	V	V	G	P	L	L	K	N	N	V	E	E	L	L	K	.	.	S	N	T	P	L	N	V	L	A	L	N	Q	P	.
Query Conservation																																																																		.	.														.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.														.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	T	A	A	Q	E	L	L	T	R	H	G	V	H	A	L	A	G	T	F	L	S	H	V	G	L	A	V	S	D	F	A	R	Q	R	K	V	L	F	M	A	S	E	P	L	T
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														S							S															T							S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																				62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
					411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.			.	.	.	.	.	.	480	.	.		.	.
Predicted Secondary structure		.	.	.																																																																.	.										.
Query SS confidence		.	.	.																																																																.	.										.
Query Sequence		.	.	.	E	N	I	E	N	R	V	N	I	C	Y	F	A	L	S	P	E	D	E	A	R	D	A	A	R	H	I	R	D	Q	G	K	Q	A	P	L	V	L	I	P	R	S	S	L	G	D	R	V	A	N	A	F	A	Q	E	W	Q	K	L	G	G	G	T	.	.	V	L	Q	Q	K	F	G	S	T	.	S	E
Query Conservation		.	.	.																																																																.	.										.
Alig confidence		.	.	.																																																																.	.										.
Template Conservation
Template Sequence		D	A	L	T	W	E	K	G	N	R	Y	T	Y	R	L	R	P	S	T	Y	M	Q	A	A	M	L	A	A	E	A	A	K	L	P	I	T	R	W	A	T	I	A	P	N	Y	E	Y	G	Q	S	A	V	A	R	F	K	E	L	L	L	A	A	R	P	E	V	T	F	V	A	E	Q	W	P	A	L	Y	K	L	D
Template Known Secondary structure		G	G	G	T	T	T	T			T	T					S															T	T	S	S										S	S																			T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		485	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	A	G	V	N	G	G	S	G	I	A	L	T	G	S	P	I	T	L	R	A	T	T	D	S	G	M	T	T	N	N	P	T	L	Q	T	T	P	T	D	D	Q	F	T	N	N	G	G	R	V	D	A	V	Y	I	V	A	T	P	G	E	I	A	F	I	K	P	M	I	A	M	R	N	G	S	Q	S	G	A
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Template Sequence		A	G	P	T	V	Q	A	L	Q	Q	A	E	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	G	L	F	N	V	L	F	G	A	D	L	P	K	F	V	R	E	G	R	V	R	G	L	F	.	.	A	G
Template Known Secondary structure												T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S								T	T													T	S	S	.	.	T	T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200																																							.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.			.	.
		565	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.			620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.
Predicted Secondary structure																																																									.	.																		.	.	.	.	.	.
Query SS confidence																																																									.	.																		.	.	.	.	.	.
Query Sequence		T	L	Y	A	S	S	R	S	A	Q	G	T	A	G	P	D	F	R	L	E	M	E	G	L	Q	Y	S	E	I	P	M	L	A	G	G	N	L	P	L	M	Q	Q	A	L	S	A	V	N	N	D	Y	S	L	A	R	.	.	M	Y	A	M	G	V	D	A	W	S	L	A	N	H	F	S	Q	.	.	.	.	.	.
Query Conservation																																																									.	.																		.	.	.	.	.	.
Alig confidence																																																									.	.																		.	.	.	.	.	.
Template Conservation
Template Sequence		R	Q	V	V	S	M	L	T	G	E	P	E	Y	L	N	P	L	K	D	E	A	P	E	G	W	I	V	T	G	Y	P	W	Y	D	I	D	T	A	P	H	R	A	F	V	E	A	Y	R	A	R	W	K	E	D	P	F	V	G	S	L	V	G	Y	N	T	L	T	A	M	A	V	A	F	E	K	A	G	G	T	E
Template Known Secondary structure											S					G	G	G	G	G	G			S	S								G	G	G																		S	S																								T	S
Template Predicted Secondary structure
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
						637	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.				.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.																					.	.	.
Query SS confidence		.	.	.	.																					.	.	.
Query Sequence		.	.	.	.	M	R	Q	V	Q	G	F	E	I	N	G	N	T	G	S	L	T	A	N	P	.	.	.	D	C	V	I	N	R	N	L	S	W	L	Q	Y	Q	Q	G	Q	V	V	P	V
Query Conservation		.	.	.	.																					.	.	.
Alig confidence		.	.	.	.																					.	.	.
Template Conservation
Template Sequence		S	E	T	L	V	E	T	L	K	D	M	A	F	S	T	P	M	G	P	L	S	F	R	A	S	D	H	Q	S	T	M	G	A	W	V	G	R	T	A	L	R	D	G	K	G	V	M	V
Template Known Secondary structure									T	T	T						T	T					B		T	T	T		B	B													T	T
Template Predicted Secondary structure
Template SS confidence
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.