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Job DescriptionP45464
Confidence98.44%DateThu Jan 5 12:02:41 GMT 2012
Rank38Aligned Residues204
% Identity11%Templatec3g85A_
PDB info PDB header:transcription regulatorChain: A: PDB Molecule:transcriptional regulator (laci family); PDBTitle: crystal structure of laci family transcription regulator from2 clostridium acetobutylicum
Resolution1.84 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   259260.... .....270.........280.........290.........300.........310.........320.........330......
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Query Sequence  IALLLP. . LNGQAAVFGRTIQQGFEAAKNIGTQPVAAQVAAAPAADVAEQPQPQTVDGVASPAQASVSDLTGEQPAAQPV
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Template Sequence  IALYWSSDISVNI. . . ISRFLRGLQSKLAKQNY. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TTS
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   68.70.........80 .........90.......
 
   337..340.........350.........360.........370.........380.... .....390.........400.........410.....
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Query Sequence  PVSAPATSTAAVSAPANPSAELKIYDTSSQPLSQILSQVQQDGASIVV. GPLLKNNVEELLKSNTPLNVLALNQPENIEN
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Template Sequence  . . . . . . . . . . . . . . . . . . NYNVVICPYKTDCLHLEKGISKENSFDAAIIANISNYDLEYLNKASLTLPIILFNRLSN. . .
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   98.100.........110.........120.........130.........140.........150......
 
   416...420.........430.........440......... 450.........460.........470.........480.........490...
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Query Sequence  RVNICYFALSPEDEARDAARHIRDQGKQAPLVLI. . PRSSLGDRVANAFAQEWQKLGGGTVLQQKFGSTSELRAGVNGGS
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Template Sequence  . . KYSSVNVDNYKXGEKASLLFAKKRYKSAAAILTESLNDAXDNRNKGFIETCHKNGIKISENHIIAAENSIHGGVDAAK
Template Known Secondary structure  ..SS
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   157..160.........170.........180.........190.........200.........210.........220.........230....
 
   494.....500.........510.........520.........530.........540.........550.........560........
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Query Sequence  GIALTGSPITLRATTDSGMTTNNPTLQTTPTDDQFTNNGGRVDAVYIVATPGEIAFIKPMIAMRNGSQSGATLYA
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Template Sequence  KLXK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LKNTPKALFCNSDSIALGVISVLNKRQISIPDDIEIVA
Template Known Secondary structure  TT.................................SSS

SSSTT

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   235... .240.........250.........260.........270......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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