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Job DescriptionP45464
Confidence65.53%DateThu Jan 5 12:02:41 GMT 2012
Rank142Aligned Residues171
% Identity9%Templatec2yhcA_
PDB info PDB header:membrane proteinChain: A: PDB Molecule:upf0169 lipoprotein yfio; PDBTitle: structure of bamd from e. coli
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   63......70.........80......... 90.........100.........110.........120..... ....130.........
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Query Sequence  INWQLLAIRALVKEGKTGQAVELFNQL. PQELNDAQRREKTLLAVEIKLAQKDFAGAQNLLAKI. . TPADLEQNQQARYW
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Template Sequence  PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM
Template Known Secondary structure  T

TTSTTTT

TT
TT
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   12.......20.........30.........40.........50.........60.........70.........80.........90.
 
   140.........150.........160.........170.........180.... .....190......
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Query Sequence  QAKIDASQGRPSIDLLRALIAQEPLLGAKEKQQNIDATWQALSSM. . . . . . . . . . . . . . . . . . . . . . . TQEQANTLVINA
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Template Sequence  RGLTNMALDDDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY
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TT
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   92.......100.........110.........120.........130.........140.........150.........160.........170.
 
   197..200. ........210.........220.........230....
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Query Sequence  DENIL. . QGWLDLQRVWFDNRNDPDMMKAGIADWQKRYPN
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Template Sequence  PDTQATRDALPLMENAYRQ. MQMNAQAEKVAKIIAANSSN
Template Known Secondary structure  TTS.TT


S
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   186...190.........200.... .....210.........220....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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