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Job DescriptionP45464
Confidence96.47%DateThu Jan 5 12:02:41 GMT 2012
Rank92Aligned Residues208
% Identity8%Templatec2x7xA_
PDB info PDB header:transferaseChain: A: PDB Molecule:sensor protein; PDBTitle: fructose binding periplasmic domain of hybrid two component2 system bt1754
Resolution2.64 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   258.260.........270.........280.........290.........300.........310.........320.........330.......
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Query Sequence  KIALLLPLNGQAAVFGRTIQQGFEAAKNIGTQPVAAQVAAAPAADVAEQPQPQTVDGVASPAQASVSDLTGEQPAAQPVP
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Template Sequence  RIGVAQCSDDS. . . WRHKMNDEILREAMFYN. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  S

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   34.....40.... .....50.........60.
 
   338.340.........350.........360.........370. ........380... ......390....... ..400.........410..
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Query Sequence  VSAPATSTAAVSAPANPSAELKIYDTSSQPLSQI. . LSQVQQDGASIV. VGPLLKNNVEELLK. . SNTPLNVLALNQPEN
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Template Sequence  . . . . . . . . . . . . . . . . . GVSVEIRSAGDDNSKQAEDVHYFMDEGVDLLIISANEAAPMTPIVEEAYQKGIPVILVDRKIL
Template Known Secondary structure  .................S

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   62.......70.........80.........90.........100.........110.........120....
 
   413......420.........430.........440......... 450.........460.........470.........480... .....
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Query Sequence  IENRVNICYFALSPEDEARDAARHIRDQGKQAPLVLI. . PRSSLGDRVANAFAQEWQKLGGGTVLQQKFGSTS. . ELRAG
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Template Sequence  SDKYTAYIGADNYEIGRSVGNYIASSLKGKGNIVELTGLSGSTPAMERHQGFMAAISKFPDIKLIDKADAAWERGPAEIE
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   125....130.........140.........150.........160.........170.........180.........190.........200....
 
   489490.........500.........510.........520.........530.........540.........550.........560........
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Query Sequence  VNGGSGIALTGSPITLRATTDSGMTTNNPTLQTTPTDDQFTNNGGRVDAVYIVATPGEIAFIKPMIAMRNGSQSGATLYA
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Template Sequence  MDSMLR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RHPKIDAVYAHNDRIAPGAYQAAKMAGREK. . EMIFVG
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   205....210 .........220.........230.........240 ......
 
   569570..
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Query Sequence  SSRS
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Template Sequence  IDAL
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   247..250
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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