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Job DescriptionP45464
Confidence97.49%DateThu Jan 5 12:02:41 GMT 2012
Rank72Aligned Residues215
% Identity14%Templatec2vk2A_
PDB info PDB header:transport proteinChain: A: PDB Molecule:abc transporter periplasmic-binding protein ytfq; PDBTitle: crystal structure of a galactofuranose binding protein
Resolution1.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   256...260.........270.........280.........290.........300.........310.........320.........330.....
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Query Sequence  TNKIALLLPLNGQAAVFGRTIQQGFEAAKNIGTQPVAAQVAAAPAADVAEQPQPQTVDGVASPAQASVSDLTGEQPAAQP
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Template Sequence  PLTVGFSQVGSE. . SGWRAAETNVAKSEAEKRG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   2.......10... ......20.........30..
 
   336...340.........350.........360.........370. ........380..... ....390....... ..400.........410
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Query Sequence  VPVSAPATSTAAVSAPANPSAELKIYDTSSQPLSQI. . LSQVQQDGASIVVG. PLLKNNVEELLK. . SNTPLNVLALNQP
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Template Sequence  . . . . . . . . . . . . . . . . . . . . ITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRS
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TT
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   33......40.........50.........60.........70.........80.........90..
 
   411........420.........430.........440 ......... 450.........460.........470.........480...
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Query Sequence  . ENIENRVNICYFALSPEDEARDAARHIRDQ. . . GKQAPLVLI. . PRSSLGDRVANAFAQEWQKLGGGTVLQQKFGSTS.
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Template Sequence  IDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTR
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   93......100.........110.........120.........130.........140.........150.........160.........170..
 
   484.....490.........500.........510.........520.........530.........540.........550.........560..
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Query Sequence  . ELRAGVNGGSGIALTGSPITLRATTDSGMTTNNPTLQTTPTDDQFTNNGGRVDAVYIVATPGEIAFIKPMIAMRNGSQS
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Template Sequence  SKGKEVMESFIKAEN. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . NGKNICMVYAHNDDMVIGAIQAIKEAGLKPGK
Template Known Secondary structure  TT.................................TTTT

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   173......180....... ..190.........200.........210.........
 
   563......570..
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Query Sequence  GATLYASSRS
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Template Sequence  DILTGSIDGV
Template Known Secondary structure  TB

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   220.........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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