Job Description P37028 Confidence 100.00% Date Thu Jan 5 11:54:36 GMT 2012 Rank 6 Aligned Residues 242 % Identity 20% Template c3pshA_ PDB info PDB header:metal transport Chain: A: PDB Molecule:protein hi_1472; PDBTitle: classification of a haemophilus influenzae abc transporter hi1470/712 through its cognate molybdate periplasmic binding protein mola (mola3 bound to molybdate) Resolution 1.50 Å

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.			.	.	.	.	.	50	.										.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.								.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.								.	.	.	.	.	.	.	.	.
Query Sequence		N	A	A	P	R	V	I	T	L	S	P	A	N	T	E	L	A	F	A	A	G	I	T	P	.	.	V	G	V	S	S	Y	S	.	.	.	.	.	.	.	.	.	D	Y	P	P	Q	A	Q	K	I	E	Q	V	S	T	W	Q	G	M	N	L	E	R	I	V	A	L	K	P	D	L	V	I	A	W	R	G	G	N
Query Conservation																										.	.								.	.	.	.	.	.	.	.	.
Alig confidence																										.	.								.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	H	I	N	R	A	V	V	L	Q	H	Q	T	L	N	I	A	V	Q	L	D	A	T	K	Q	I	V	G	V	L	S	N	W	K	K	Q	L	G	K	N	Y	V	R	L	A	P	E	L	E	N	M	A	M	P	G	D	L	N	S	V	N	I	E	S	L	L	A	L	K	P	D	V	V	F	V	T	N	Y	A	P
Template Known Secondary structure		S	S		S																T	T		G	G	G						T	T							T	T	G	G	G	T		G	G	G	G	G		B			B		S	S		B								T			S						T	T
Template Predicted Secondary structure
Template SS confidence
		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.																					.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	E	R	Q	V	D	Q	L	A	S	L	G	I	K	V	M	W	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	T	S	I	E	Q	I	A	N	A	L	R	Q	L	A	P	W	S	P	Q	P	D	K	A	E	Q	A	A	Q	S	L	L	D	Q	Y	A	Q	L	K	A	Q
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.
Template Sequence		.	S	E	M	I	K	Q	I	S	D	V	N	I	P	V	V	A	I	S	L	R	T	G	E	V	G	E	K	G	K	L	N	P	T	L	T	D	E	D	K	A	Y	N	D	G	L	K	Q	G	I	E	L	I	A	E	V	F	E	K	K	Q	Q	G	D	E	L	V	K	A	A	F	A	N	R	K	L	L	A	D	R
Template Known Secondary structure		.									T	T	T								S			S		G	G	G	T	T		S	S				T	T																					T														T	T
Template Predicted Secondary structure		.
Template SS confidence
			117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
		150	.	.		.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure					.																																																																									.	.	.	.
Query SS confidence					.																																																																									.	.	.	.
Query Sequence		Y	A	D	.	K	P	K	K	R	V	F	L	Q	F	G	I	N	P	P	F	T	S	G	K	E	S	I	Q	N	Q	V	L	E	V	C	G	G	E	N	I	F	K	D	S	R	V	P	W	P	Q	V	S	R	E	Q	V	L	A	R	S	P	Q	A	I	V	I	T	G	G	P	D	Q	I	P	K	I	.	.	.	.
Query Conservation					.																																																																									.	.	.	.
Alig confidence					.																																																																									.	.	.	.
Template Conservation
Template Sequence		L	G	D	V	S	A	D	K	R	V	R	T	Y	M	A	N	P	D	L	G	T	Y	G	S	G	K	Y	T	G	L	M	M	E	H	A	G	A	Y	N	V	A	A	A	T	I	K	G	F	K	Q	V	S	L	E	N	V	L	E	W	N	P	A	V	I	L	V	Q	D	R	Y	P	D	V	V	P	Q	I	L	N	D
Template Known Secondary structure			T	T			T	T	T	S							B	T	T	T					B	S	S									T	T				T	T	T	T	T		B	S															S						T	T		T	T							T
Template Predicted Secondary structure
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
				225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.				.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure		.	.																			.	.	.
Query SS confidence		.	.																			.	.	.
Query Sequence		.	.	K	Q	Y	W	G	E	Q	L	K	I	P	V	I	P	L	T	S	D	.	.	.	W	F	E	R	A	S	P	R	I	I	L	A	A	Q	Q	L	C	N	A	L	S
Query Conservation		.	.																			.	.	.
Alig confidence		.	.																			.	.	.
Template Conservation
Template Sequence		Q	G	W	A	N	I	Q	A	L	K	D	K	K	V	F	L	M	P	E	Y	A	K	A	W	G	Y	P	M	P	E	A	L	A	L	G	E	V	W	L	A	K	A	L	Y
Template Known Secondary structure		G	G	G	T	T	S					T	T							T	T					S	S								T
Template Predicted Secondary structure
Template SS confidence
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions