Job Description P37028 Confidence 100.00% Date Thu Jan 5 11:54:36 GMT 2012 Rank 13 Aligned Residues 239 % Identity 17% Template c3mwgA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:iron-regulated abc transporter siderophore-binding protein PDBTitle: crystal structure of staphylococcus aureus sira Resolution 2.10 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.								.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.
Query Sequence		P	R	V	I	T	L	S	P	A	N	T	E	L	A	F	A	A	G	I	T	P	V	G	V	S	S	Y	S	.	.	.	.	.	.	.	D	Y	P	P	Q	A	Q	K	I	E	Q	V	S	T	W	Q	G	M	N	L	E	R	I	V	A	L	K	P	D	L	V	I	A	W	R	G	G	N	A	E	R	Q	V	D	Q
Query Conservation																														.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.																																						.
Template Conservation																																																																										.
Template Sequence		K	R	V	V	T	L	Y	Q	G	A	T	D	V	A	V	S	L	G	V	K	P	V	G	A	V	E	S	W	T	Q	K	P	K	F	E	Y	I	K	N	D	L	K	D	T	K	I	V	G	Q	E	P	A	P	N	L	E	E	I	S	K	L	K	P	D	L	I	V	A	S	K	V	R	.	N	E	K	V	Y	D	Q
Template Known Secondary structure								S										T	T				S						S	S	S	T	T	S		T	T	T	G	G	G	G	T	T							T	T										T			S									.		G	G	G
Template Predicted Secondary structure																																																																										.
Template SS confidence
		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.					.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure																																																									.	.	.	.
Query SS confidence																																																									.	.	.	.
Query Sequence		L	A	S	L	G	I	K	V	M	W	V	D	A	T	S	I	E	Q	I	A	N	A	L	R	Q	L	A	P	W	S	P	Q	P	D	K	A	E	Q	A	A	Q	S	L	L	D	Q	Y	A	Q	L	K	A	Q	Y	A	.	.	.	.	D	K	P	K	K	R	V	F	L	Q	F	G	I	N	P	P	F	T	S	G	K
Query Conservation																																																									.	.	.	.
Alig confidence																	.	.	.																																						.	.	.	.
Template Conservation																	.	.	.
Template Sequence		L	S	K	I	A	P	T	V	S	T	D	T	V	F	K	.	.	.	F	K	D	T	T	K	L	X	G	K	A	L	G	K	E	K	E	A	E	D	L	L	K	K	Y	D	D	K	V	A	A	F	Q	K	D	A	K	A	K	Y	K	D	A	W	P	L	K	A	S	V	V	N	F	R	A	D	H	T	R	I	Y	A
Template Known Secondary structure						S						S	S	S	S		.	.	.													T																												G	G	G		S		B								S	S						S
Template Predicted Secondary structure																	.	.	.
Template SS confidence
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.				.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190							.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220																.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																				.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	S	I	Q	N	Q	V	L	E	V	C	G	G	E	N	I	F	K	.	.	.	.	.	.	D	S	R	V	P	W	P	Q	V	S	R	E	Q	V	L	A	R	S	P	Q	A	I	V	I	T	G	G	P	D	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	P	K	I	K	Q	Y	W	G	E	Q
Query Conservation																				.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	G	Y	A	G	E	I	L	N	D	L	G	F	K	R	N	K	D	L	Q	K	Q	V	D	N	G	K	D	I	I	Q	L	T	S	K	E	S	I	P	L	X	N	A	D	H	I	F	V	V	K	S	D	P	N	A	K	D	A	A	L	V	K	K	T	E	S	E	W	T	S	S	K	E	W	K	N	L	D	A	V
Template Known Secondary structure		S										T	T		B											T	T		S							G	G	G	G	G	G	G			S									T	T	S	T	T														S						S
Template Predicted Secondary structure
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	I	P	V	I	P	L	T	S	D	W	F	E	R	A	S	P	R	I	I	L	A	A	Q	Q	L	C	N	A	L	S	Q	V	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	N	N	Q	V	S	D	D	L	D	E	I	T	W	N	L	A	G	G	Y	K	S	S	L	K	L	I	D	D	L	Y	E	K	L	N
Template Known Secondary structure			T	T												T	T	S		S															T	T
Template Predicted Secondary structure
Template SS confidence
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions