Job Description P37028 Confidence 42.88% Date Thu Jan 5 11:54:36 GMT 2012 Rank 62 Aligned Residues 174 % Identity 15% Template c3hjtB_ PDB info PDB header:cell adhesion, transport protein Chain: B: PDB Molecule:lmb; PDBTitle: structure of laminin binding protein (lmb) of streptococcus2 agalactiae a bifunctional protein with adhesin and metal3 transporting activity Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.																.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130										.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.
Query Sequence		K	P	D	L	V	I	A	W	R	G	G	N	A	E	R	Q	V	D	Q	L	A	S	L	G	I	K	V	M	W	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	T	S	I	E	Q	I	A	N	A	L	R	Q	L	A	P	W	S	P	Q	P	D	.	.	.	.	.	.	.	.	.	K	A	E
Query Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	A	D	L	F	V	Y	H	S	H	T	L	E	A	W	A	R	D	L	D	P	K	S	K	V	N	V	F	E	A	S	K	P	L	T	L	D	R	V	K	L	Y	D	P	H	T	W	T	D	P	V	L	A	G	E	E	A	V	N	I	A	K	E	L	G	H	L	D	P	K	H	K	D	S	Y	T	K	K	A	K
Template Known Secondary structure		T	S	S					S		T	T	T		G	G	G	T	T						S						T	T	S	S	S				B				B			G	G	G	G	S																				G	G	G
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure																																																																												.	.	.	.	.	.
Query SS confidence																																																																												.	.	.	.	.	.
Query Sequence		Q	A	A	Q	S	L	L	D	Q	Y	A	Q	L	K	A	Q	Y	A	D	K	P	K	K	R	V	F	L	Q	F	G	I	N	P	P	F	T	S	G	K	E	S	I	Q	N	Q	V	L	E	V	C	G	G	E	N	I	F	K	D	S	R	V	P	W	P	Q	V	S	R	E	Q	V	L	A	R	.	.	.	.	.	.
Query Conservation																																																																												.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	F	K	K	E	A	E	Q	L	T	E	E	Y	T	Q	K	F	K	K	V	R	S	K	T	F	V	T	Q	H	T	A	.	.	.	.	.	.	.	.	.	.	.	F	S	Y	L	A	K	R	F	G	L	K	Q	L	G	I	S	G	I	S	P	E	Q	E	P	S	P	R	Q	L	K	E	I	Q	D	F	V	K	E
Template Known Secondary structure																		G	G	G		S									S		.	.	.	.	.	.	.	.	.	.	.								T	T									S	S	T	T	S
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.												.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
			208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250		.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure		.																																												.
Query SS confidence		.																																												.
Query Sequence		.	S	P	Q	A	I	V	I	T	G	G	P	D	Q	I	P	K	I	K	Q	Y	W	G	E	Q	L	K	I	P	V	I	P	L	T	S	D	W	F	E	R	A	S	P	R	.	I	I	L	A	A	Q	Q	L	C	N	A	L	S	Q
Query Conservation		.																																												.
Alig confidence		.									.	.																																		.
Template Conservation											.	.
Template Sequence		Y	N	V	K	T	I	F	A	E	.	.	D	N	V	N	P	K	I	A	H	A	I	A	K	S	T	G	A	K	V	K	T	L	S	P	L	E	A	A	P	S	G	N	K	T	Y	L	E	N	L	R	A	N	L	E	V	L	Y	Q
Template Known Secondary structure		T	T							B	.	.	T	T	B													T									S		S			S	S
Template Predicted Secondary structure											.	.
Template SS confidence
		247	.	.	250	.	.	.	.	.			.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions