Job Description P37028 Confidence 31.53% Date Thu Jan 5 11:54:36 GMT 2012 Rank 74 Aligned Residues 217 % Identity 12% Template c2ov3A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:periplasmic binding protein component of an abc PDBTitle: crystal structure of 138-173 znua deletion mutant plus zinc2 bound Resolution 2.40 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.		.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure																																																								.
Query SS confidence																																																								.
Query Sequence		A	P	R	V	I	T	L	S	P	A	N	T	E	L	A	F	A	A	G	I	T	P	V	G	V	S	S	Y	S	D	Y	P	P	Q	A	Q	K	I	E	Q	V	S	T	W	Q	G	M	N	L	E	R	I	V	A	.	L	K	P	D	L	V	I	A	W	R	G	G	N	A	E	R	Q	V	D	Q	L	A	S	L	G
Query Conservation																																																								.
Alig confidence																												.	.										.	.	.	.	.													.
Template Conservation																												.	.										.	.	.	.	.
Template Sequence		A	M	D	I	T	V	S	I	P	P	Q	Q	Y	F	L	E	K	I	G	G	D	L	V	R	V	S	.	.	V	L	V	P	G	N	N	D	P	.	.	.	.	.	H	T	Y	E	P	K	P	Q	Q	L	A	A	L	S	E	A	E	A	Y	V	L	I	G	L	G	F	E	Q	P	W	L	E	K	L	K	A	A	N
Template Known Secondary structure								S	S												G	G	G					.	.		S	S		T	T	S		G	.	.	.	.	.	G	G											G	G	G		S							T	T	S	S	T	T	T
Template Predicted Secondary structure																												.	.										.	.	.	.	.
Template SS confidence
		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.			.	.	.	.	.	.	80	.	.						.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
		102	.	.	.	.	.	.	.	110	.																						.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.										130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.
Query Sequence		I	K	V	M	W	V	D	A	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	E	Q	I	A	N	A	L	R	Q	L	A	P	W	S	P	Q	P	.	.	.	.	.	.	.	.	.	D	K	A	E	Q	A	A	Q	S	L	L	D	Q	Y	A	Q	L	K	A	Q	Y	A
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	N	M	K	L	I	D	S	A	Q	G	I	T	P	L	E	M	P	G	R	L	M	V	A	D	P	H	I	W	L	S	P	T	L	V	K	R	Q	A	T	T	I	A	K	E	L	A	E	L	D	P	D	N	R	D	Q	Y	E	A	N	L	A	A	F	L	A	E	L	E	R	L	N	Q	E	L	G	Q	I	L	Q
Template Known Secondary structure		S	S	S					T	T	T	T					B		S	S	S	T	T	S	B				G	G	G																					G	G	G																											T
Template Predicted Secondary structure
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200						.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.
Query Sequence		D	K	P	K	K	R	V	F	L	Q	F	G	I	N	P	P	F	T	S	G	K	E	S	I	Q	N	Q	V	L	E	V	C	G	G	E	N	I	F	K	D	S	R	V	P	W	P	Q	V	S	.	.	.	.	.	R	E	Q	V	L	A	R	S	P	Q	A	I	V	I	T	G	G	P	D	Q	I	P	K	I	K	Q
Query Conservation																																																			.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.																.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.																																														.	.
Template Sequence		P	L	P	Q	R	K	F	I	V	F	H	P	S	.	.	.	.	.	.	.	.	.	.	.	W	A	Y	F	A	R	D	Y	N	L	V	Q	I	P	I	E	V	E	G	Q	E	P	S	A	Q	E	L	K	Q	L	I	D	T	A	K	E	N	N	L	T	M	V	F	G	E	.	.	T	Q	F	S	T	K	S	S	E
Template Known Secondary structure		T		S							S	S			.	.	.	.	.	.	.	.	.	.	.								T	T						S			S	S	S				T	T													T								.	.	T	T	S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.																																														.	.
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.												.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290			.	.	.	.	.	.	.	.	.
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	W	G	E	Q	L	K	I	P	V	I	P	L	T	S	D	W	F	E	R	A	S	P	R	I	I	L	A	A	Q	Q	L	C	N	A	L	S	Q
Query Conservation
Alig confidence																		.	.	.	.	.
Template Conservation																		.	.	.	.	.
Template Sequence		A	I	A	A	E	I	G	A	G	V	E	L	L	D	P	L	.	.	.	.	.	A	A	D	W	S	S	N	L	K	A	V	A	Q	K	I	A	N
Template Known Secondary structure								T								T	T	.	.	.	.	.		S	S
Template Predicted Secondary structure																		.	.	.	.	.
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.						.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions