Job Description P37028 Confidence 70.46% Date Thu Jan 5 11:54:36 GMT 2012 Rank 31 Aligned Residues 225 % Identity 11% Template c1toaA_ PDB info PDB header:binding protein Chain: A: PDB Molecule:protein (periplasmic binding protein troa); PDBTitle: periplasmic zinc binding protein troa from treponema pallidum Resolution 1.80 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.		.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure																																																							.
Query SS confidence																																																							.
Query Sequence		P	R	V	I	T	L	S	P	A	N	T	E	L	A	F	A	A	G	I	T	P	V	G	V	S	S	Y	S	D	Y	P	P	Q	A	Q	K	I	E	Q	V	S	T	W	Q	G	M	N	L	E	R	I	V	A	.	L	K	P	D	L	V	I	A	W	R	G	G	N	A	E	R	Q	V	D	Q	L	A	S	L	G	I
Query Conservation																																																							.
Alig confidence																											.	.										.	.	.	.	.													.
Template Conservation																											.	.										.	.	.	.	.
Template Sequence		P	L	V	V	T	T	I	G	M	I	A	D	A	V	K	N	I	A	Q	G	D	V	H	L	K	.	.	G	L	M	G	P	G	V	D	P	.	.	.	.	.	H	L	Y	T	A	T	A	G	D	V	E	W	L	G	N	A	D	L	I	L	Y	N	G	L	H	L	E	T	K	M	G	E	V	F	S	K	L	R	G
Template Known Secondary structure							S	S												G	G	G	S				.	.		S			T	T			T	.	.	.	.	.	T	T															S							T	T		S	T	T									T	T
Template Predicted Secondary structure																											.	.										.	.	.	.	.
Template SS confidence
		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.			.	60	.	.	.	.	.	.	.						.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
		103	.	.	.	.	.	.	110																							.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.										.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.
Query Sequence		K	V	M	W	V	D	A	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	I	E	Q	I	A	N	A	L	R	Q	L	A	P	W	S	P	Q	.	.	.	.	.	.	.	.	.	P	D	K	A	E	Q	A	A	Q	S	L	L	D	Q	Y	A	Q	L	K	A	Q	Y	A
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	R	L	V	V	A	V	S	E	T	I	P	V	S	Q	R	L	S	L	E	E	A	E	F	D	P	H	V	W	F	D	V	K	L	W	S	Y	S	V	K	A	V	Y	E	S	L	C	K	L	L	P	G	K	T	R	E	F	T	Q	R	Y	Q	A	Y	Q	Q	Q	L	D	K	L	D	A	Y	V	R	R	K	A	Q
Template Known Secondary structure		S	S					G	G	G	G	S		G	G	G	S		B	S	T	T	S		B				G	G	G	S																				G	G	G
Template Predicted Secondary structure
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.								.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.
Predicted Secondary structure																																																										.	.	.	.	.	.	.											.
Query SS confidence																																																										.	.	.	.	.	.	.											.
Query Sequence		D	K	P	K	K	R	V	F	L	Q	F	G	I	N	P	P	F	T	S	G	K	E	S	I	Q	N	Q	V	L	E	V	C	G	G	E	N	I	F	K	D	S	R	V	P	W	P	Q	V	S	R	E	Q	V	L	A	R	.	.	.	.	.	.	.	S	P	Q	A	I	V	I	T	G	G	.	P	D	Q	I	P	K
Query Conservation																																																										.	.	.	.	.	.	.											.
Alig confidence															.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.											.
Template Conservation															.	.	.	.	.	.	.	.	.
Template Sequence		S	L	P	A	E	R	R	V	L	V	T	A	H	.	.	.	.	.	.	.	.	.	D	A	F	G	Y	F	S	R	A	Y	G	F	E	V	K	G	L	Q	G	V	S	T	A	S	E	A	S	A	H	D	M	Q	E	L	A	A	F	I	A	Q	R	K	L	P	A	I	F	I	E	S	S	I	P	H	K	N	V	E
Template Known Secondary structure		T	S		G	G	G								.	.	.	.	.	.	.	.	.	S										T									S	S		S	S																	T	T		S						T	T	S		T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.										200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.							.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.
Query Sequence		I	K	Q	Y	W	G	E	Q	L	K	I	P	V	I	P	L	T	S	D	W	.	.	.	.	.	.	F	E	R	A	S	P	R	I	I	L	A	A	Q	Q	L	C	N	A	L	S	Q
Query Conservation																						.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.
Template Conservation
Template Sequence		A	L	R	D	A	V	Q	A	R	G	H	V	V	Q	I	G	G	E	L	F	S	D	A	M	G	D	A	G	T	S	E	G	T	Y	V	G	M	V	T	H	N	I	D	T	I	V	A
Template Known Secondary structure									T	T	T											S	S	S				T	T	S	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions