Job Description P76045 Confidence 97.37% Date Thu Jan 5 12:17:48 GMT 2012 Rank 16 Aligned Residues 223 % Identity 14% Template c3qq2C_ PDB info PDB header:membrane protein/protein transport Chain: C: PDB Molecule:brka autotransporter; PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka Resolution 3.00 Å

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		59	60	.	.	.	.	.	.	.	.	.		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.		.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure													.																																			.
Query SS confidence													.																																			.
Query Sequence		A	A	N	G	P	W	R	I	A	L	A	.	Y	Y	Q	E	G	P	V	D	Y	S	A	G	K	R	G	T	W	F	D	R	P	E	L	E	V	H	Y	Q	F	L	E	N	D	D	.	F	S	F	G	L	T	G	G	F	R	N	Y	G	Y	H	Y	V	D	E	P	G	K	D	T	A	N	M	Q	R	W	K	I	A
Query Conservation													.																																			.
Alig confidence													.							.	.	.	.	.	.																							.																										.	.	.
Template Conservation																				.	.	.	.	.	.																																																	.	.	.
Template Sequence		D	A	G	G	P	W	A	R	T	F	S	E	R	Q	Q	I	S	N	.	.	.	.	.	.	A	Y	D	Q	T	V	S	G	L	E	I	G	L	D	R	G	W	S	A	S	G	G	R	W	Y	A	G	G	L	L	G	Y	T	Y	A	D	R	T	Y	P	G	D	G	G	G	K	V	K	.	.	.	G	L	H	V	G
Template Known Secondary structure																				.	.	.	.	.	.																				T	T																		B	T	T	T	B						.	.	.
Template Predicted Secondary structure																				.	.	.	.	.	.																																																	.	.	.
Template SS confidence
		745	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.							.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810				.	.	.	.	.
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.									.	.	.	.	.	.	170	.				.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.									.	.	.																												.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.									.	.	.																												.	.	.	.	.	.	.
Query Sequence		P	D	W	D	V	K	L	T	D	D	L	R	F	N	G	W	L	S	M	Y	K	F	A	N	D	L	N	.	.	.	.	.	.	.	.	T	T	G	Y	A	D	T	R	.	.	.	V	E	T	E	T	G	L	Q	Y	T	F	N	E	T	V	A	L	R	V	N	Y	Y	L	E	R	G	F	.	.	.	.	.	.	.
Query Conservation																													.	.	.	.	.	.	.	.									.	.	.																												.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.									.	.	.																												.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	Y	A	A	Y	V	G	D	G	G	Y	Y	L	D	T	V	L	R	L	G	R	Y	D	Q	Q	Y	N	I	A	G	T	D	G	G	R	V	T	A	D	Y	R	T	S	G	A	A	W	S	L	E	G	G	R	R	F	E	L	P	N	D	W	F	A	E	P	Q	A	E	V	M	L	W	R	T	S	G	K	R	Y	R
Template Known Secondary structure									S	S	S	B																				S	S	S																				B					G	G	G
Template Predicted Secondary structure
Template SS confidence
		820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.
							199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.		.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure		.	.	.	.	.																											.
Query SS confidence		.	.	.	.	.																											.
Query Sequence		.	.	.	.	.	N	M	D	D	S	R	N	N	G	E	F	S	T	Q	E	I	R	A	Y	L	P	L	T	L	G	N	.	H	S	V	T	P	Y	T	R	I	G	L	D	R	W	S	N	W	D	W	Q	D	D	I	E	R	E	G	H	D	F	N	R	V	G	L	F	Y	G	Y	D	F	Q	N	G	L	S	V	S
Query Conservation		.	.	.	.	.																											.
Alig confidence		.	.	.	.	.																											.																		.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.
Template Sequence		A	S	N	G	L	R	V	K	V	D	A	N	T	A	T	L	G	R	L	G	L	R	F	G	R	R	I	A	L	A	G	G	N	I	V	Q	P	Y	A	R	L	G	W	T	Q	E	F	K	S	.	.	.	.	.	.	.	T	G	R	H	G	R	V	E	L	G	A	G	V	D	A	A	L	G	K	G	H	N	L	Y
Template Known Secondary structure			S	S	S																										T	T	S																		.	.	.	.	.	.	.				B														G	G	G	B
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.
Template SS confidence
		900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.								.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	Y	A	F	E	W	Q	D	H	D	E	G	D	S	D	K	F	H	Y	A	G	V	G	V	N	Y	S	F
Query Conservation
Alig confidence										.	.	.	.
Template Conservation										.	.	.	.
Template Sequence		A	S	Y	E	Y	A	A	G	.	.	.	.	D	R	I	N	I	P	W	S	F	H	A	G	Y	R	Y	S	F
Template Known Secondary structure										.	.	.	.	S	S													B
Template Predicted Secondary structure										.	.	.	.
Template SS confidence
		986	.	.	.	990	.	.	.					.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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