Job Description P76045 Confidence 88.50% Date Thu Jan 5 12:17:48 GMT 2012 Rank 31 Aligned Residues 206 % Identity 14% Template c3nsgA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein f; PDBTitle: crystal structure of ompf, an outer membrane protein from salmonella2 typhi Resolution 2.79 Å

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		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	P	E	L	E	V	H	Y	Q	F	L	E	N	D	D	F	S	F	G	L	T	G	G	F	R	N	Y	G	Y	H	Y	V	D	E	P	G	K	D	T	A	N	M	Q	R	W	K	I	A	P	D	W	D	V	K	L	T	D	D	L	R	F	N	G	W	L	S	M	Y	K	F	A	N	D	L	N	T	T	G	Y	A
Query Conservation
Alig confidence																																										.	.	.
Template Conservation																																										.	.	.
Template Sequence		R	A	G	G	L	L	T	Y	R	N	S	D	F	F	G	L	V	D	G	L	S	F	G	I	Q	Y	Q	G	K	N	Q	D	N	H	S	I	N	S	Q	N	.	.	.	G	D	G	V	G	Y	T	X	A	Y	E	F	D	G	F	G	V	T	A	A	Y	S	N	S	K	R	T	N	D	Q	Q	D	R	D	G	N	G
Template Known Secondary structure												S	S	S	S	S	S		S	S											B		S	S	S		G	G	G		B	.	.	.		S											T	T														S	T	T	S	S	S	S	S
Template Predicted Secondary structure																																										.	.	.
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.				170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.		.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.			.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure																		.																						.	.
Query SS confidence																		.																						.	.
Query Sequence		D	T	R	V	E	T	E	T	G	L	Q	Y	T	F	N	E	.	T	V	A	L	R	V	N	Y	Y	L	E	R	G	F	N	M	D	D	S	R	N	.	.	N	G	E	F	S	T	Q	E	I	R	A	Y	L	P	L	T	L	G	N	H	S	V	T	P	Y	T	R	I	G	L	D	R	W	S	N	W	D	W	Q	D
Query Conservation																		.																						.	.
Alig confidence																		.																						.	.																				.											.	.	.
Template Conservation																																																													.											.	.	.
Template Sequence		D	R	A	E	S	R	A	V	G	A	K	Y	D	A	N	N	V	Y	L	A	A	V	Y	A	E	T	R	N	X	S	I	V	E	N	T	V	T	D	T	V	E	X	A	N	K	T	Q	N	L	E	V	V	A	Q	Y	Q	F	D	F	.	G	L	R	P	A	I	S	Y	V	Q	.	.	.	S	K	G	K	Q	L	N
Template Known Secondary structure		S														T	T											S	S							T	T	T							S														T	T	.	S										.	.	.					S		T
Template Predicted Secondary structure																																																													.											.	.	.
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.		.	.	.	.	270	.	.	.	.	.				.	.	.	.	280	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290				.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure																																															.	.	.
Query SS confidence																																															.	.	.
Query Sequence		D	I	E	R	E	G	H	D	F	N	R	V	G	L	F	Y	G	Y	D	F	Q	N	G	L	S	V	S	L	E	Y	A	F	E	W	Q	D	H	D	E	G	D	S	D	K	F	.	.	.	H	Y	A	G	V	G	V	N	Y	S	F
Query Conservation																																															.	.	.
Alig confidence																																															.	.	.
Template Conservation
Template Sequence		G	A	G	G	S	A	D	L	A	K	Y	I	Q	A	G	A	T	Y	Y	F	N	K	N	X	N	V	W	V	D	Y	R	F	N	L	L	D	E	N	D	Y	S	S	S	Y	V	G	T	D	D	Q	A	A	V	G	I	T	Y	Q	F
Template Known Secondary structure		T	T	T	S																		S	S																S	S		T	T	T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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