Job Description P76045 Confidence 94.86% Date Thu Jan 5 12:17:48 GMT 2012 Rank 24 Aligned Residues 116 % Identity 19% Template c3dzmB_ PDB info PDB header:unknown function Chain: B: PDB Molecule:hypothetical conserved protein; PDBTitle: crystal structure of a major outer membrane protein from thermus2 thermophilus hb27 Resolution 2.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.													.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.			.	.	.	.	.	.	230	.			.	.	.	.	.	.	.					.	240	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.																						.	.									.	.								.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.																						.	.									.	.								.	.	.	.
Query Sequence		V	A	L	R	V	N	Y	Y	L	E	R	G	F	N	M	D	D	.	.	.	.	.	.	.	.	.	.	.	.	S	R	N	N	G	E	F	S	T	Q	E	I	R	A	Y	L	P	L	T	L	G	.	.	N	H	S	V	T	P	Y	T	.	.	R	I	G	L	D	R	W	.	.	.	.	S	N	W	D	W	Q	D
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.																						.	.									.	.								.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.																						.	.									.	.								.	.	.	.
Template Conservation
Template Sequence		V	R	L	G	V	G	F	A	T	S	D	A	L	D	D	G	Y	D	L	G	G	G	T	T	W	G	D	V	K	E	A	G	K	F	S	E	W	G	Q	N	V	T	L	S	L	D	V	L	Y	K	P	L	P	V	E	V	A	P	Y	F	G	V	R	Y	N	F	F	S	G	G	Y	T	D	P	E	D	N	L	T	I
Template Known Secondary structure														B		T	T		B		S	S	S		B									T																					S																					S	S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
		246	.	.	.	250	.	.	.	.	.	.	.			.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.										.	280	.	.	.	.	.	.	.	.																							.	290	.	.
Predicted Secondary structure														.	.																						.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.																						.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	I	E	R	E	G	H	D	F	N	R	V	.	.	G	L	F	Y	G	Y	D	F	Q	N	G	L	S	V	S	L	E	Y	A	F	E	.	.	.	.	.	.	.	.	.	W	Q	D	H	D	E	G	D	S	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	F	H	Y
Query Conservation														.	.																						.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.																						.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	A	Q	T	I	S	S	N	Q	L	G	L	G	L	G	V	R	A	A	Y	P	L	M	P	N	L	S	L	V	G	D	L	G	V	D	Y	Y	F	Q	A	C	F	T	R	V	E	E	D	D	S	G	N	K	S	Q	S	S	V	C	P	G	D	S	G	Y	E	D	V	N	K	F	V	T	Q	P	E	W	V	L	K
Template Known Secondary structure																									T	T																								T	T										T	T	S	T	T								B				S
Template Predicted Secondary structure
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		293	.	.	.	.	.	.	300	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	V	G	V	N	Y	S	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	R	L	G	A	A	Y	R	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		199	200	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions