Job Description P76045 Confidence 94.66% Date Thu Jan 5 12:17:48 GMT 2012 Rank 26 Aligned Residues 199 % Identity 15% Template c3a2rX_ PDB info PDB header:membrane protein Chain: X: PDB Molecule:outer membrane protein ii; PDBTitle: crystal structure of outer membrane protein porb from neisseria2 meningitidis Resolution 2.30 Å

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		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Query SS confidence																																																																										.	.	.	.	.	.	.	.
Query Sequence		D	R	P	E	L	E	V	H	Y	Q	F	L	E	N	D	D	F	S	F	G	L	T	G	G	F	R	N	Y	G	Y	H	Y	V	D	E	P	G	K	D	T	A	N	M	Q	R	W	K	I	A	P	D	W	D	V	K	L	T	D	D	L	R	F	N	G	W	L	S	M	Y	K	F	A	.	.	.	.	.	.	.	.
Query Conservation																																																																										.	.	.	.	.	.	.	.
Alig confidence																																											.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.	.
Template Sequence		E	S	R	E	I	S	V	R	Y	D	S	P	V	F	A	G	F	S	G	S	V	Q	Y	V	P	R	D	N	A	N	D	V	D	K	Y	K	H	T	K	S	S	.	.	.	.	.	.	.	.	.	R	E	S	Y	H	A	G	L	K	Y	E	N	A	G	F	F	G	Q	Y	A	G	S	F	A	K	Y	A	D	L	N
Template Known Secondary structure															B	T	T															S	T	T	S	S	S	T	T	S			.	.	.	.	.	.	.	.	.													T	T
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.										.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
								160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.		.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure		.	.	.	.	.	.																		.
Query SS confidence		.	.	.	.	.	.																		.
Query Sequence		.	.	.	.	.	.	N	D	L	N	T	T	G	Y	A	D	T	R	V	E	T	E	T	.	G	L	Q	Y	T	F	N	E	T	V	A	L	R	V	N	Y	Y	L	E	R	G	F	N	M	D	D	S	R	N	N	G	E	F	S	T	Q	E	I	R	A	Y	L	P	L	T	L	G	N	H	S	V	T	P	Y	T	R
Query Conservation		.	.	.	.	.	.																		.
Alig confidence		.	.	.	.	.	.																		.
Template Conservation
Template Sequence		T	D	A	E	R	V	A	V	N	T	A	N	A	H	P	V	K	D	Y	Q	V	H	R	V	V	A	G	Y	D	A	N	D	L	Y	V	S	V	A	G	Q	Y	E	A	A	K	N	N	E	V	G	S	I	K	G	K	K	H	E	Q	T	Q	V	A	A	T	A	A	Y	R	F	G	N	V	T	P	R	V	S	Y	A
Template Known Secondary structure		T	T	S		B			T	T		T	T																			T	T																S	S	S	T	T	T	T																B	T	T
Template Predicted Secondary structure
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	L	D	R	W	S	N	W	D	W	Q	D	D	I	E	R	E	G	H	D	F	N	R	V	G	L	F	Y	G	Y	D	F	Q	N	G	L	S	V	S	L	E	Y	A	F	E	W	Q	D	H	D	E	G	D	S	D	K	F	H	Y	A	G	V	G	V	N	Y	S	F
Query Conservation
Alig confidence								.	.	.	.	.																																																		.
Template Conservation								.	.	.	.	.																																																		.
Template Sequence		H	G	F	K	A	K	.	.	.	.	.	V	N	G	V	K	D	A	N	Y	Q	Y	D	Q	V	I	V	G	A	D	Y	D	F	S	K	R	T	S	A	L	V	S	A	G	W	L	K	Q	G	K	G	A	G	K	V	E	Q	T	A	S	.	M	V	G	L	R	H	K	F
Template Known Secondary structure								.	.	.	.	.		T	T				G	G	G													S	S	S	S													S	S	T	T	S								.
Template Predicted Secondary structure								.	.	.	.	.																																																		.
Template SS confidence
		279	280	.	.	.	.						.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.		.	.	.	.	.	.	340	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions