Job Description P76045 Confidence 98.34% Date Thu Jan 5 12:17:48 GMT 2012 Rank 4 Aligned Residues 171 % Identity 15% Template c2wjqA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:probable n-acetylneuraminic acid outer membrane channel PDBTitle: nanc porin structure in hexagonal crystal form. Resolution 2.00 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	A	M	Y	E	I	E	N	V	E	G	Y	G	E	D	M	D	G	L	A	E	P	S	V	Y	F	N	A	A	N	G	P	W	R	I	A	L	A	Y	Y	Q	E	G	P	V	D	Y	S	A	G	K	R	G	T	W	F	D	R	P	E	L	E	V	H	Y	Q	F	L	E	N	D	D	F	S	F	G	L	T	G
Query Conservation
Alig confidence												.	.	.	.	.																			.												.	.	.	.	.																						.	.	.	.	.	.
Template Conservation												.	.	.	.	.																			.												.	.	.	.	.																						.	.	.	.	.	.
Template Sequence		W	W	A	S	M	E	S	N	T	W	.	.	.	.	.	N	T	I	N	D	V	Q	V	E	V	N	Y	A	I	K	L	D	D	.	Q	W	T	V	R	P	G	M	L	T	H	.	.	.	.	.	F	S	S	N	G	T	R	Y	G	P	Y	V	K	L	S	W	D	A	T	K	D	.	.	.	.	.	.	L	N	F
Template Known Secondary structure												.	.	.	.	.																S	S	S	.	S											.	.	.	.	.			T	T															S	S	S	.	.	.	.	.	.
Template Predicted Secondary structure												.	.	.	.	.																			.												.	.	.	.	.																						.	.	.	.	.	.
Template SS confidence
		30	.	.	.	.	.	.	.	.	.						40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.						.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.							90	.	.
		111	.	.	.	.	.	.	.	.	120	.	.					.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.
Query SS confidence														.	.	.	.
Query Sequence		G	F	R	N	Y	G	Y	H	Y	V	D	E	.	.	.	.	P	G	K	D	T	A	N	M	Q	R	W	K	I	A	P	D	W	D	V	K	L	T	D	D	L	R	F	N	G	W	L	S	M	Y	K	F	A	N	D	L	N	T	T	G	Y	A	D	T	R	V	E	T	E	T	G	L	Q	Y	T	F	N	E	T	V
Query Conservation														.	.	.	.
Alig confidence														.	.	.	.							.
Template Conservation																								.
Template Sequence		G	I	R	Y	R	Y	D	W	K	A	Y	R	Q	Q	D	L	S	G	D	M	S	R	.	D	N	V	H	R	W	D	G	Y	V	T	Y	H	I	N	S	D	F	T	F	A	W	Q	T	T	L	Y	S	K	Q	N	D	Y	R	Y	A	N	H	K	K	W	A	T	E	N	A	F	V	L	Q	Y	H	M	T	P	D	I
Template Known Secondary structure											S	S					T	T	S					.															S	S	S													S	S	S				T	T	S	S	S													S	B	T	T
Template Predicted Secondary structure																								.
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.		.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		187	.	.	190	.	.		.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		A	L	R	V	N	Y	.	Y	L	E	R	G	F	N	M	D	D	S	R	N	N	G	E	F	S	T	Q	E	I	R	A	Y	L	P	L	T	L
Query Conservation								.
Alig confidence								.				.	.	.
Template Conservation												.	.	.
Template Sequence		T	P	Y	I	E	Y	D	Y	L	D	.	.	.	R	Q	G	V	Y	N	G	R	D	N	L	S	E	N	S	Y	R	I	G	V	S	F	K	L
Template Known Secondary structure												.	.	.	S					T	T
Template Predicted Secondary structure												.	.	.
Template SS confidence
		182	.	.	.	.	.	.	.	190	.				.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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