Job Description P0AFF4 Confidence 100.00% Date Thu Jan 5 11:26:06 GMT 2012 Rank 2 Aligned Residues 406 % Identity 11% Template d1pw4a_ SCOP info MFS general substrate transporter MFS general substrate transporter Glycerol-3-phosphate transporter Resolution 3.30

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.				.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.
Query SS confidence																						.	.	.
Query Sequence		N	L	K	L	Q	L	K	I	L	S	F	L	Q	F	C	L	W	G	S	W	.	.	.	L	T	T	L	G	S	Y	M	F	V	T	L	K	F	D	G	A	S	I	G	A	V	Y	S	S	L	G	I	A	A	V	F	M	P	A	L	L	G	I	V	A	D	K	W	L	S	A	K	W	V	Y	A	I	C	H	T	I
Query Conservation																						.	.	.
Alig confidence																						.	.	.									.
Template Conservation																																	.
Template Sequence		R	L	R	W	Q	I	F	L	G	I	F	F	G	Y	A	A	Y	Y	L	V	R	K	N	F	A	L	A	M	P	Y	L	.	V	E	Q	G	F	S	R	G	D	L	G	F	A	L	S	G	I	S	I	A	Y	G	F	S	K	F	I	M	G	S	V	S	D	R	S	N	P	R	V	F	L	P	A	G	L	I	L	A
Template Known Secondary structure																							T	S								T	.	T	S	S	T	T		S	S																											S
Template Predicted Secondary structure																																	.
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		79	80	.	.	.	.	.				.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure									.	.	.
Query SS confidence									.	.	.
Query Sequence		G	A	I	T	L	F	M	.	.	.	A	A	Q	V	T	T	P	E	A	M	F	L	V	I	L	I	N	S	F	A	Y	M	P	T	L	G	L	I	N	T	I	S	Y	Y	R	L	Q	N	A	G	M	D	I	V	T	D	F	P	P	I	R	I	W	G	T	I	G	F	I	M	A	M	W	V	V	S	L	S	G	F
Query Conservation									.	.	.
Alig confidence									.	.	.																																														.	.
Template Conservation																																																									.	.
Template Sequence		A	A	V	M	L	F	M	G	F	V	P	W	A	T	S	S	I	A	V	M	F	V	L	L	F	L	C	G	W	F	Q	G	M	G	W	P	P	C	G	R	T	M	V	H	W	W	S	Q	K	E	R	G	G	I	V	.	.	S	V	W	N	C	A	H	N	V	G	G	G	I	P	P	L	L	F	L	L	G	M	A
Template Known Secondary structure																S	S	S	S																T										T	T		T	T	T							.	.												T	S
Template Predicted Secondary structure																																																									.	.
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.			.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	S	H	M	Q	L	Y	I	G	A	A	L	S	A	I	L	V	L	F	T	L	T	L	P	H	I	P	V	A	K	Q	Q	A	N	Q	S	W	T	T	L	L	G	L	D	A	F	A	L	F	K	N	K	R	M	A	I	F	F	I	F	S	M	L	L	G	A	E	L	Q	I	T	N	M	F	G	N	T	F	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	F	N	D	W	H	A	A	L	Y	M	P	A	F	C	A	I	L	V	A	L	F	A	F	A	M	M	R	D	T	P	Q	S	C	G	L	P	P	I	E	E	Y	K	N	D	T	A	K	Q	I	F	M	Q	Y	V	L	P	N	K	L	L	W	Y	I	A	I	A	N	V	F	V	Y	L	L	R	Y	G	I	L	D
Template Known Secondary structure			T			S	T	T		T																					S	S	T	T	T				S		T	T	T						T							T	S	S
Template Predicted Secondary structure
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	S	F	D	K	D	P	M	F	A	S	S	F	I	V	Q	H	A	S	I	I	M	S	I	S	Q	I	S	E	T	L	F	I	L	T	I	P	F	F	L	S	R	Y	G	I	K	N	V	M	M	I	S	I	V	A	W	I	L	R	F	A	L	F	A	Y	G	D	P	T	P	F	G	T	V	L	L	V	L	S	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	S	P	T	Y	L	K	E	V	K	H	F	A	L	D	K	S	S	W	A	Y	F	L	Y	E	Y	A	G	I	P	G	T	L	L	C	G	W	M	S	D	K	V	F	R	G	N	R	G	A	T	G	V	F	F	M	T	L	V	T	I	A	T	I	V	Y	W	M	N	P	A	G	N	P	T	V	D	M	I	C	M
Template Known Secondary structure							B	T	T	B	S																																T	S	T	T																				T	T	S			T	T
Template Predicted Secondary structure
Template SS confidence
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	Y	G	C	A	F	D	F	F	N	I	S	G	S	V	F	V	E	K	E	V	S	P	A	I	R	A	S	A	Q	G	M	F	L	M	M	T	N	G	F	G	C	I	L	G	G	I	V	S	G	K	V	V	E	M	Y	T	Q	N	G	I	T	D	W	Q	T	V	W	L	I	F	A	G	Y	S	V	V	L	A
Query Conservation
Alig confidence																																																												.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.
Template Sequence		I	V	I	G	F	L	I	Y	G	P	V	M	L	I	G	L	H	A	L	E	L	A	P	K	K	A	A	G	T	A	A	G	F	T	G	L	F	G	Y	L	G	G	S	V	A	A	S	A	I	V	G	Y	T	V	D	F	F	G	.	.	.	.	.	.	W	D	G	G	F	M	V	M	I	G	G	S	I	L	A	V
Template Known Secondary structure									T													T	S		T	T																															S	S		.	.	.	.	.	.	S
Template Predicted Secondary structure																																																												.	.	.	.	.	.
Template SS confidence
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.							.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	F	M	A	M	F	K	Y	K	H	V	R	V	P	T	G	T	Q	T	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	L	L	I	V	V	M	I	G	E	K	R	R	H	E	Q	L	L	Q	E	L
Template Known Secondary structure																	G	G	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		429	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions