Job Description P0AFF4 Confidence 100.00% Date Thu Jan 5 11:26:06 GMT 2012 Rank 1 Aligned Residues 406 % Identity 10% Template d1pv7a_ SCOP info MFS general substrate transporter MFS general substrate transporter LacY-like proton/sugar symporter Resolution 3.60

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L	K	L	Q	L	K	I	L	S	F	L	Q	F	C	L	W	G	S	W	L	T	T	L	G	S	Y	M	F	V	T	L	K	F	D	G	A	S	I	G	A	V	Y	S	S	L	G	I	A	A	V	F	M	P	A	L	L	G	I	V	A	D	K	W	L	S	A	K	W	V	Y	A	I	C	H	T	I	G	A	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	N	F	W	M	F	G	L	F	F	F	F	Y	F	F	I	M	G	A	Y	F	P	F	F	P	I	W	L	H	D	I	N	H	I	S	K	S	D	T	G	I	I	F	A	A	I	S	L	F	S	L	L	F	Q	P	L	F	G	L	L	S	D	K	L	G	L	R	K	Y	L	L	W	I	I	T	G	M	L	V	M
Template Known Secondary structure																																																						T												T	T		T												T
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.				.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.
Query SS confidence																.	.	.
Query Sequence		T	L	F	M	A	A	Q	V	T	T	P	E	A	M	.	.	.	F	L	V	I	L	I	N	S	F	A	Y	M	P	T	L	G	L	I	N	T	I	S	Y	Y	R	L	Q	N	A	G	M	D	I	V	T	D	F	P	P	I	R	I	W	G	T	I	G	F	I	M	A	M	W	V	V	S	L	S	G	F	E	L	S
Query Conservation																.	.	.
Alig confidence																.	.	.
Template Conservation
Template Sequence		F	A	P	F	F	I	F	I	F	G	P	L	L	Q	Y	N	I	L	V	G	S	I	V	G	G	I	Y	L	G	F	C	F	N	A	G	A	P	A	V	E	A	F	I	E	K	V	S	R	R	S	N	F	E	F	G	R	A	R	M	F	G	C	V	G	W	A	L	G	A	S	I	V	G	I	M	F	T	I	N	N
Template Known Secondary structure									T							T	T								T	T	T	T	G	G	G	G	G	T	T																	S
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	M	Q	L	Y	I	G	A	A	L	S	A	I	L	V	L	F	T	L	T	L	P	H	I	P	V	A	K	Q	Q	A	N	Q	S	W	T	T	L	L	G	L	D	A	F	A	L	F	K	N	K	R	M	A	I	F	F	I	F	S	M	L	L	G	A	E	L	Q	I	T	N	M	F	G	N	T	F	L	H	S	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	F	V	F	W	L	G	S	G	C	A	L	I	L	A	V	L	L	F	F	A	K	T	D	A	P	S	S	A	T	V	A	N	A	V	G	A	N	H	S	A	F	S	L	K	L	A	L	E	L	F	R	Q	P	K	L	W	F	L	S	L	Y	V	I	G	V	S	C	T	Y	D	V	F	D	Q	Q	F	A	N	F
Template Known Secondary structure																					S	S				S		S	S	S		S	S					S														T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	K	D	P	M	F	A	S	S	F	I	V	Q	H	A	S	I	I	M	S	I	S	Q	I	S	E	T	L	F	I	L	T	I	P	F	F	L	S	R	Y	G	I	K	N	V	M	M	I	S	I	V	A	W	I	L	R	F	A	L	F	A	Y	G	D	P	T	P	F	G	T	V	L	L	V	L	S	M	I	V	Y
Query Conservation
Alig confidence																																																															.	.	.	.
Template Conservation																																																															.	.	.	.
Template Sequence		F	T	S	F	F	A	T	G	E	Q	G	T	R	V	F	G	Y	V	T	T	M	G	E	L	L	N	A	S	I	M	F	F	A	P	L	I	I	N	R	I	G	G	K	N	A	L	L	L	A	G	T	I	M	S	V	R	I	I	G	S	S	.	.	.	.	F	A	T	S	A	L	E	V	V	I	L	K	T	L	H
Template Known Secondary structure			T	T	S	S	S																									T	T																														.	.	.	.	T
Template Predicted Secondary structure																																																															.	.	.	.
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.					.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	C	A	F	D	F	F	N	I	S	G	S	V	F	V	E	K	E	V	S	P	A	I	R	A	S	A	Q	G	M	F	L	M	M	T	N	G	F	G	C	I	L	G	G	I	V	S	G	K	V	V	E	M	Y	T	Q	N	G	I	T	D	W	Q	T	V	W	L	I	F	A	G	Y	S	V	V	L	A	F	A	F
Query Conservation
Alig confidence																																																									.	.	.	.	.	.
Template Conservation																																																									.	.	.	.	.	.
Template Sequence		M	F	E	V	P	F	L	L	V	G	C	F	K	Y	I	T	S	Q	F	E	V	R	F	S	A	T	I	Y	L	V	C	F	C	F	F	K	Q	L	A	M	I	F	M	S	V	L	A	G	N	M	Y	E	S	I	G	.	.	.	.	.	.	F	Q	G	A	Y	L	V	L	G	L	V	A	L	G	F	T	L	I	S
Template Known Secondary structure																				S		G	G	G										T	T	T																					.	.	.	.	.	.
Template Predicted Secondary structure																																																									.	.	.	.	.	.
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.							.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	M	F	K	Y	K	H	V	R	V	P	T	G	T	Q	T	V	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	F	T	L	S	G	P	G	P	L	S	L	L	R	R	Q	V	N	E
Template Known Secondary structure					S			S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions