Job Description P41036 Confidence 100.00% Date Thu Jan 5 12:01:19 GMT 2012 Rank 2 Aligned Residues 403 % Identity 12% Template c3o7pA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:l-fucose-proton symporter; PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a) Resolution 3.20 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	W	L	G	Y	L	L	D	G	F	D	F	V	L	I	A	L	V	L	T	E	V	Q	G	E	F	G	L	T	T	V	Q	A	A	S	L	I	S	A	A	F	I	S	R	W	F	G	G	L	M	L	G	A	M	G	D	R	Y	G	R	R	L	A	M	V	T	S	I	V	L	F	S	A	G	T	L	A	C	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	P	F	A	L	L	C	S	L	F	F	L	W	A	V	A	N	N	L	N	D	I	L	L	P	Q	F	Q	Q	A	F	F	Q	A	G	L	I	Q	S	A	F	Y	F	G	Y	F	I	I	P	I	P	A	G	I	L	M	K	K	L	S	Y	K	A	G	I	I	T	G	L	F	L	Y	A	L	G	A	A	L	F	W
Template Known Secondary structure																														T	T			T	T													T	T											S																			T
Template Predicted Secondary structure
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		104	.				.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure				.	.	.
Query SS confidence				.	.	.
Query Sequence		F	A	.	.	.	P	G	Y	I	T	M	F	I	A	R	L	V	I	G	M	G	M	A	G	E	Y	G	S	S	A	T	Y	V	I	E	S	W	P	K	H	L	R	N	K	A	S	G	F	L	I	S	G	F	S	V	G	A	V	V	A	A	Q	V	Y	S	L	V	V	P	V	W	G	W	R	A	L	F	F	I	G
Query Conservation				.	.	.
Alig confidence				.	.	.
Template Conservation
Template Sequence		P	A	A	E	I	M	N	Y	T	L	F	L	V	G	L	F	I	I	A	A	G	L	G	C	L	E	T	A	A	N	P	F	V	T	V	L	G	P	E	S	S	G	H	F	R	L	N	L	A	Q	T	F	A	S	F	G	A	I	I	A	V	V	F	G	Q	S	L	I	L	S	N	V	P	H	Q	S	Q	D	V	L
Template Known Secondary structure						T	T																														S	S		G	G	G																										T	T	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	P	I	I	F	A	L	W	L	R	K	N	I	P	E	A	E	D	W	K	E	K	H	A	G	K	A	P	V	R	T	M	V	D	I	L	Y	R	G	E	H	R	I	A	N	I	V	M	T	L	A	A	A	T	A	L	W	F	C	F	A	G	N	L	Q	N	A	A	I	V	A	V	L	G	L	L	C	A	A
Query Conservation
Alig confidence																																																																											.	.	.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.	.	.
Template Sequence		D	K	M	S	P	E	Q	L	S	A	Y	K	H	S	L	V	L	S	V	Q	T	P	Y	M	I	I	V	A	I	V	L	L	V	A	L	L	I	M	L	T	K	F	P	A	L	Q	S	D	N	H	S	D	A	K	Q	G	S	F	S	A	S	L	S	R	L	A	R	I	R	H	W	R	W	.	.	.	.	.	.	.
Template Known Secondary structure				S																	T	T																			S						T	T	T					S	S	T	T	S																	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure
Query SS confidence
Query Sequence		I	F	I	S	F	M	V	Q	S	A	G	K	R	W	P	T	G	V	M	L	M	V	V	V	L	F	A	F	L	Y	S	W	P	I	Q	A	L	L	P	T	Y	L	K	T	D	L	A	Y	N	P	H	T	V	A	N	V	L	F	F	S	G	F	G	A	A	V	G	C	C	V	G	G	F	L	G	D	W	L	G	T
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	V	L	A	Q	F	C	Y	V	G	A	Q	T	A	C	W	S	Y	L	I	R	Y	A	V	E	E	I	P	G	M	T	A	G	F	A	A	N	Y	L	T	G	T	M	V	C	F	F	I	G	R	F	T	G	T	W	L	I	S	R	F	A	P
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											S	T	T																															S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																				263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure
Query SS confidence
Query Sequence		R	K	A	Y	V	C	S	L	L	A	S	Q	L	L	I	I	P	V	F	A	I	G	G	A	N	V	W	V	L	G	L	L	L	F	F	Q	Q	M	L	G	Q	G	I	A	G	I	L	P	K	L	I	G	G	Y	F	D	T	D	Q	R	A	A	G	L	G	F	T	Y	N	V	G	A	L	G	G	A	L	A	P	I
Query Conservation
Alig confidence																						.	.	.																																								.	.
Template Conservation																						.	.	.																																								.	.
Template Sequence		H	K	V	L	A	A	Y	A	L	I	A	M	A	L	C	L	I	S	A	F	.	.	.	A	G	G	H	V	G	L	I	A	L	T	L	C	S	A	F	M	S	I	Q	Y	P	T	I	F	S	L	G	I	K	N	L	G	Q	D	T	K	Y	G	.	.	S	S	F	I	V	M	T	I	I	G	G	G	I	V	T	P
Template Known Secondary structure																						.	.	.	S																	T	T											S	S		G	G	G					.	.							G	G	G
Template Predicted Secondary structure																						.	.	.																																								.	.
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.				.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.			.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
		421	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	A	L	I	A	Q	R	L	D	L	G	T	A	L	A	S	L	S	F	S	L	T	F	V	V	I	L	L	I	G	L	D	M	P	S	R
Query Conservation
Alig confidence																					.
Template Conservation																					.
Template Sequence		V	M	G	F	V	S	D	A	A	G	N	I	P	T	A	E	L	I	P	.	A	L	C	F	A	V	I	F	I	F	A	R	F	R	S	Q	T
Template Known Secondary structure											T	S	S	G	G	G	G				.												T	S
Template Predicted Secondary structure																					.
Template SS confidence
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.		.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.