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Job Description | P08400 | Confidence | 98.35% | Date | Thu Jan 5 11:01:28 GMT 2012 |
Rank | 43 | Aligned Residues | 96 |
% Identity | 22% | Template | c3h4lB_ |
PDB info |
PDB header:dna binding protein, protein binding | Chain: B: PDB Molecule:dna mismatch repair protein pms1; |
PDBTitle: crystal structure of n terminal domain of a dna repair protein
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Resolution | 2.50 Å |
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318 | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | |
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Predicted Secondary structure |   |
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Query Sequence |   |
L | R | S | A | I | S | N | L | V | Y | N | A | V | N | H | T | P | E | G | T | H | I | T | V | R | W | Q | R | V | P | H | G | A | E | F | S | V | E | D | N | G | P | G | I | A | P | E | H | I | P | R | L | T | E | R | F | Y | R | V | D | K | A | R | S | R | Q | . |
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T | G | G | S | G | L | G | L |
Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
L | T | T | A | V | K | E | L | V | D | N | S | I | D | A | N | . |
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A | N | Q | I | E | I | I | F | K | D | Y | G | L | E | . |
S | I | E | C | S | D | N | G | D | G | I | D | P | S | N | Y | E | F | L | A | L | K | H | Y | T | S | K | I | A | K | F | Q | D | V | A | K | V | Q | T | L | G | F | R | G | E | A | L |
Template Known Secondary structure |   |
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| S |  |  |  |  |  |  |  | G | G | G | T | S | . |  |  |  |  |  |  |
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Template Predicted Secondary structure |   |
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Template SS confidence |   |
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55 | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | |
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. | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . |
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392 | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . |
Predicted Secondary structure |   |
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Query SS confidence |   |
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Query Sequence |   |
A | I | V | K | H | A | V | N | H | H | E | S | R | L | N | I | E | S | T | V | G | K | G | T | R | F | S | F | V | I |
Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
S | S | L | C | G | I | . |
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A | K | L | S | V | I | T | T | T | S | P | P | K | A | D | K | L | E | Y |
Template Known Secondary structure |   |
 |  |  |  |  | S | . | . | . | . | . | S |  |  |  |  |  |  |  | S | S | T | T |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
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Template SS confidence |   |
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132 | . | . | . | . | . | |
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. | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . |
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No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
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