Job Description P08400 Confidence 100.00% Date Thu Jan 5 11:01:28 GMT 2012 Rank 3 Aligned Residues 192 % Identity 20% Template c3d2rB_ PDB info PDB header:transferase Chain: B: PDB Molecule:[pyruvate dehydrogenase [lipoamide]] kinase isozyme 4; PDBTitle: crystal structure of pyruvate dehydrogenase kinase isoform 4 in2 complex with adp Resolution 2.03 Å

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		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	E	Q	P	L	E	G	A	V	R	E	K	A	L	H	T	M	R	E	Q	T	Q	R	M	E	G	L	V	K	Q	L	L	T	L	S	K	I	E	A	A	P	T	H	L	L	N	E	K	V	D	V	P	M	M	L	R	V	V	E	R	E	A	Q	T	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	V	D	P	V	T	N	Q	N	L	Q	Y	F	L	D	R	F	Y	M	N	R	I	S	T	R	M	L	M	N	Q	H	I	L	I	F	S	D	S	Q	T	G	N	P	S	H	I	G	S	I	D	P	N	C	D	V	V	A	V	V	Q	D	A	F	E	C	S	R	M	L	C	D	Q	Y	Y	L	S	S	P	E	L
Template Known Secondary structure					T	T	T																															S	S					T	T	S	B	T	T	B																										S
Template Predicted Secondary structure
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.								.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.
Query Sequence		Q	K	K	Q	T	F	T	F	E	I	D	N	G	L	K	V	S	G	N	E	D	Q	L	R	S	A	I	S	N	L	V	Y	N	A	V	N	H	.	.	.	.	.	.	.	T	P	E	G	T	H	I	T	V	R	W	Q	R	V	P	H	G	A	E	F	S	V	E	D	N	G	P	G	I	A	P	E	H	I	P	R
Query Conservation																																							.	.	.	.	.	.	.
Alig confidence																																							.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	L	T	Q	V	N	G	K	F	P	D	Q	P	I	H	I	V	Y	V	P	S	H	L	H	H	M	L	F	E	L	F	K	N	A	M	R	A	T	V	E	H	Q	E	N	Q	P	S	L	T	P	I	E	V	I	V	V	L	G	K	E	D	L	T	I	K	I	S	D	R	G	G	G	V	P	L	R	I	I	D	R
Template Known Secondary structure								S	S	S	T	T	S																														T	T	T	S	S	S												S	S										S					G	G	G	T	T	G
Template Predicted Secondary structure
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	E	R	F	Y	R	V	D	K	A	R	S	R	Q	T	G	G	S	G	L	G	L	A	I	V	K	H	A	V	N	H	H	E	S	R	L	N	I	E	S	T	V	G	K	G	T	R	F	S	F	V	I	P	E
Query Conservation
Alig confidence												.	.
Template Conservation												.	.
Template Sequence		L	F	S	Y	T	Y	S	T	A	P	.	.	T	P	P	L	A	G	F	G	Y	G	L	P	I	S	R	L	Y	A	K	Y	F	Q	G	D	L	N	L	Y	S	L	S	G	Y	G	T	D	A	I	I	Y	L	K	A
Template Known Secondary structure		G	G	S	T	T			S	S		.	.					S	S	S														T	T									T	T	T										S
Template Predicted Secondary structure												.	.
Template SS confidence
		306	.	.	.	310	.	.	.	.	.			.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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