Job Description P08400 Confidence 100.00% Date Thu Jan 5 11:01:28 GMT 2012 Rank 4 Aligned Residues 187 % Identity 18% Template c2bu8A_ PDB info PDB header:transferase Chain: A: PDB Molecule:pyruvate dehydrogenase kinase isoenzyme 2; PDBTitle: crystal structures of human pyruvate dehydrogenase kinase 22 containing physiological and synthetic ligands Resolution 2.5 Å

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		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.						.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.											.	.
Predicted Secondary structure																																															.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Query Sequence		E	Q	P	L	E	G	A	V	R	E	K	A	L	H	T	M	R	E	Q	T	Q	R	M	E	G	L	V	K	Q	L	L	T	L	S	K	I	E	A	A	P	T	H	L	L	N	.	.	.	.	.	E	K	V	D	V	P	M	M	L	R	V	V	E	R	E	A	Q	T	.	.	.	.	.	.	.	.	.	.	L	S
Query Conservation																																															.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Alig confidence																																															.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	D	P	V	S	N	Q	N	I	Q	Y	F	L	D	R	F	Y	L	S	R	I	S	I	R	M	L	I	N	Q	H	T	L	I	F	D	G	S	T	N	P	A	H	P	K	H	I	G	S	I	D	P	N	C	N	V	S	E	V	V	K	D	A	Y	D	M	A	K	L	L	C	D	K	Y	Y	M	A	S	P	D	L
Template Known Secondary structure																																			T	S	S	S		S	S		S		S		B	T	T	B																										S
Template Predicted Secondary structure
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.								.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.
Query Sequence		Q	K	K	Q	T	F	T	F	E	I	D	N	G	L	K	V	S	G	N	E	D	Q	L	R	S	A	I	S	N	L	V	Y	N	A	V	N	H	.	.	.	.	.	.	.	T	P	E	G	T	H	I	T	V	R	W	Q	R	V	P	H	G	A	E	F	S	V	E	D	N	G	P	G	I	A	P	E	H	I	P	R
Query Conservation																																							.	.	.	.	.	.	.
Alig confidence																																							.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	I	Q	E	I	N	A	A	N	S	K	Q	P	I	H	M	V	Y	V	P	S	H	L	Y	H	M	L	F	E	L	F	K	N	A	M	R	A	T	V	E	S	H	E	S	S	L	I	L	P	P	I	K	V	M	V	A	L	G	E	E	D	L	S	I	K	M	S	D	R	G	G	G	V	P	L	R	K	I	E	R
Template Known Secondary structure								S	S	S	T	T	S																													T	T	T	T		S													S	S																			G	G
Template Predicted Secondary structure
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	E	R	F	Y	R	V	D	K	A	R	S	R	Q	T	G	G	S	G	L	G	L	A	I	V	K	H	A	V	N	H	H	E	S	R	L	N	I	E	S	T	V	G	K	G	T	R	F	S	F	V	I	P	E
Query Conservation
Alig confidence								.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.
Template Sequence		L	F	S	Y	M	Y	.	.	.	.	.	.	S	T	P	L	A	G	F	G	Y	G	L	P	I	S	R	L	Y	A	K	Y	F	Q	G	D	L	Q	L	F	S	M	E	G	F	G	T	D	A	V	I	Y	L	K	A
Template Known Secondary structure		G	G		T	T	T	.	.	.	.	.	.	T						S	S													T	T									T	T											S
Template Predicted Secondary structure								.	.	.	.	.	.
Template SS confidence
		295	.	.	.	.	300							.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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