Job Description P08400 Confidence 99.98% Date Thu Jan 5 11:01:28 GMT 2012 Rank 6 Aligned Residues 178 % Identity 17% Template c1y8oA_ PDB info PDB header:transferase Chain: A: PDB Molecule:[pyruvate dehydrogenase [lipoamide]] kinase isozyme 3; PDBTitle: crystal structure of the pdk3-l2 complex Resolution 2.48 Å

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		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.										.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.																																	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.																																	.	.
Query Sequence		A	V	R	E	K	A	L	H	T	M	R	E	Q	T	Q	R	M	E	G	L	V	K	Q	L	L	T	L	S	K	I	E	A	A	P	T	H	L	.	.	.	.	.	.	.	.	.	L	N	E	K	V	D	V	P	M	M	L	R	V	V	E	R	E	A	Q	T	L	S	Q	K	K	Q	T	F	T	F	E	I	.	.
Query Conservation																																							.	.	.	.	.	.	.	.	.																																	.	.
Alig confidence																																							.	.	.	.	.	.	.	.	.																																	.	.
Template Conservation
Template Sequence		T	N	I	Q	Y	F	L	D	R	F	Y	T	N	R	I	S	F	R	M	L	I	N	Q	H	T	L	L	F	G	G	D	T	N	P	V	H	P	K	H	I	G	S	I	D	P	T	C	N	V	A	D	V	V	K	D	A	Y	E	T	A	K	M	L	C	E	Q	Y	Y	L	V	A	P	E	L	E	V	E	E	F	N
Template Known Secondary structure																														S			S	S		S	S	T	T	S	B	T	T	B																										S
Template Predicted Secondary structure
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
						306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.									.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Predicted Secondary structure		.	.	.	.																													.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.																													.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	D	N	G	L	K	V	S	G	N	E	D	Q	L	R	S	A	I	S	N	L	V	Y	N	A	V	N	H	T	.	.	.	.	.	.	.	.	P	E	G	T	H	I	T	V	R	W	Q	R	V	P	H	G	A	E	F	S	V	E	D	N	G	P	G	I	A	P	E	H	I	P	R	L	T	E	R	F
Query Conservation		.	.	.	.																													.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.																													.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	K	A	P	D	K	P	I	Q	V	V	Y	V	P	S	H	L	F	H	M	L	F	E	L	F	K	N	S	M	R	A	T	V	E	L	Y	E	D	R	K	E	G	Y	P	A	V	K	T	L	V	T	L	G	K	E	D	L	S	I	K	I	S	D	L	G	G	G	V	P	L	R	K	I	D	R	L	F	N	Y	M
Template Known Secondary structure		T	T	S	T	T	S																															T	T		S	S													S	S										S									G	G	G	G		T	T
Template Predicted Secondary structure
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	R	V	D	K	A	R	S	R	Q	T	G	G	S	G	L	G	L	A	I	V	K	H	A	V	N	H	H	E	S	R	L	N	I	E	S	T	V	G	K	G	T	R	F	S	F	V	I	P	E
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.
Template Sequence		Y	S	P	.	.	.	.	.	.	.	.	.	L	F	G	Y	G	L	P	I	S	R	L	Y	A	R	Y	F	Q	G	D	L	K	L	Y	S	M	E	G	V	G	T	D	A	V	I	Y	L	K	A
Template Known Secondary structure		T			.	.	.	.	.	.	.	.	.			T	T												T	T									T	T	T										S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.
Template SS confidence
		305	.	.										.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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