Job Description P52697 Confidence 99.75% Date Thu Jan 5 12:06:01 GMT 2012 Rank 47 Aligned Residues 290 % Identity 10% Template c4a11B_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:dna excision repair protein ercc-8; PDBTitle: structure of the hsddb1-hscsa complex Resolution 3.31 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																							.																																				.	.	.	.	.	.	.
Query SS confidence																																							.																																				.	.	.	.	.	.	.
Query Sequence		S	P	E	S	Q	Q	I	H	V	W	N	L	N	H	E	G	A	L	T	L	T	Q	V	V	D	V	P	G	Q	V	Q	P	M	V	V	S	P	.	D	K	R	Y	L	Y	V	G	V	R	P	E	F	R	V	L	A	Y	R	I	A	P	D	D	G	A	L	T	F	A	A	E	S	A	L	.	.	.	.	.	.	.
Query Conservation																																							.																																				.	.	.	.	.	.	.
Alig confidence																								.	.														.						.																														.	.	.	.	.	.	.
Template Conservation																								.	.																				.
Template Sequence		R	R	A	E	S	T	R	R	V	L	G	L	E	L	N	K	D	R	D	V	E	R	.	.	I	H	G	G	G	I	N	T	L	D	I	E	P	V	E	G	R	Y	M	.	L	S	G	G	S	D	G	V	I	V	L	Y	D	L	E	N	S	S	R	Q	S	Y	Y	T	C	K	A	V	C	S	I	G	R	D	H	P
Template Known Secondary structure												T					T	T						.	.			S	S									T	T	T					.					T	T	S											S	S	S	S												T	T		T
Template Predicted Secondary structure																								.	.																				.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40			.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
					81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	P	G	S	P	T	H	I	S	T	D	H	Q	G	Q	F	V	F	V	G	S	Y	N	A	G	N	V	S	V	T	R	L	E	D	G	L	P	V	G	V	V	D	V	V	E	G	L	D	G	C	H	S	A	N	I	S	P	D	N	R	T	L	W	V	P	A	L	K	Q	D	R	I	C	L	F	T	V	S
Query Conservation		.	.	.
Alig confidence		.	.	.
Template Conservation
Template Sequence		D	V	H	R	Y	S	V	E	T	V	Q	W	Y	P	H	D	T	G	M	F	T	S	S	S	F	D	K	T	L	K	V	W	D	T	N	T	L	Q	T	A	D	V	F	N	F	E	E	T	V	Y	S	H	H	M	S	P	V	S	T	K	H	C	L	V	A	V	G	T	R	G	P	K	V	Q	L	C	D	L	K	S
Template Known Secondary structure		T			S	S									T	T		T	T							T	T	S							T	T	T	T									S	S									S	S		S	S									S	S	S	S						S	S	S
Template Predicted Secondary structure
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.																																										190	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	D	G	H	L	V	A	Q	D	P	A	E	V	T	T	V	E	G	A	G	P	R	H	M	V	F	H	P	N	E	Q	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	Y	C	V	N	E	L
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	S	C	S	H	I	L	Q	G	H	R	Q	E	I	L	A	V	S	W	S	P	R	Y	D	Y	I	L	A	T	A	S	A	D	S	R	V	K	L	W	D	V	R	R	A	S	G	C	L	I	T	L	D	Q	H	N	G	K	K	S	Q	A	V	E	S	A	N	T	A	H	N	G	K	V	N	G	L	C	F	T	S
Template Known Secondary structure		S											S									S	S		T	T							T	T	S							T	T		S	S			S					T	T	T	T		S				T	T	T	S	S		S		S	S									T
Template Predicted Secondary structure
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.					.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure																							.	.	.	.
Query SS confidence																							.	.	.	.
Query Sequence		N	S	S	V	D	V	W	E	L	K	D	P	H	G	N	I	E	C	V	Q	T	.	.	.	.	L	D	M	M	P	E	N	F	S	D	T	R	W	A	A	D	I	H	I	T	P	D	G	R	H	L	Y	A	C	D	R	T	A	S	L	I	T	V	F	S	V	S	E	D	G	S	V	L	S	K	E	G	F	Q	P
Query Conservation																							.	.	.	.
Alig confidence																							.	.	.	.																																																							.
Template Conservation																																																																																	.
Template Sequence		D	G	L	H	L	L	T	V	G	T	D	N	R	M	R	L	W	N	S	S	N	G	E	N	T	L	V	N	Y	G	K	V	C	N	N	S	K	K	G	L	K	F	T	V	S	C	G	C	S	S	E	F	V	F	V	P	Y	G	S	T	I	A	V	Y	T	V	Y	S	G	E	Q	I	T	M	L	K	G	H	Y	.
Template Known Secondary structure		T	S	S							T	T	S							T	T	T			B													S	S									S	S	S	S								T	T							T	T	T											S	.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	E	T	Q	P	R	G	F	N	V	D	H	S	G	K	Y	L	I	A	A	G	Q	K	S	H	H	I	S	V	Y	E	I	V
Query Conservation
Alig confidence		.	.																						.
Template Conservation		.	.																						.
Template Sequence		.	.	K	T	V	D	C	C	V	F	Q	S	N	F	Q	E	L	Y	S	G	S	R	D	.	C	N	I	L	A	W	V	P	S
Template Known Secondary structure		.	.	S									T	T	T	T							T	T	.	S
Template Predicted Secondary structure		.	.																						.
Template SS confidence
				335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.		.	.	.	.	360	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions