Phyre 2 alignment of P52697 with c3sbrF

Job Description P52697
Confidence 99.87% Date Thu Jan 5 12:06:01 GMT 2012

Rank 21 Aligned Residues 282

% Identity 13% Template c3sbrF_

PDB info PDB header:oxidoreductase Chain: F: PDB Molecule:nitrous-oxide reductase; PDBTitle: pseudomonas stutzeri nitrous oxide reductase, p1 crystal form with2 substrate

Resolution 2.24 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.																													.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	K	Q	T	V	Y	I	A	S	P	E	S	Q	Q	I	H	V	W	N	L	N	H	E	G	A	L	T	L	T	Q	V	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	V	P	G	Q	V	Q	P	M	V	V	S	P	D	K	R	Y	L	Y	V	G
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	D	Y	Y	G	F	W	S	G	G	H	Q	G	E	V	R	V	L	G	V	P	S	M	R	E	L	M	R	I	P	V	F	N	V	D	S	A	T	G	W	G	L	T	N	E	S	R	H	I	M	G	D	S	A	K	F	L	N	G	D	C	H	H	P	H	I	S	M	T	D	G	K	Y	D	G	K	Y	L	F	I	N
Template Known Secondary structure	S								B	T	T									T	T	T								S	S	S			T	T	T		T	T	T	B								G	G	G	G	G						B									T	T
Template Predicted Secondary structure
Template SS confidence
	69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.

	54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	R	P	E	F	R	V	L	A	Y	R	I	A	P	D	D	G	A	L	T	F	A	A	E	S	A	L	P	G	S	P	T	H	I	S	T	D	H	Q	G	Q	F	V	F	V	G	S	Y	N	A	G	N	V	S	V	T	R	L	E	D	G	L	P	V	G	V	V	D	V	V	E	G	L	D	G	C	H	S	A	N
Query Conservation
Alig confidence															.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	D	K	A	N	S	R	V	A	R	I	R	L	D	I	.	.	M	K	C	D	K	M	I	T	V	P	N	V	Q	A	I	H	G	L	R	L	Q	K	V	P	H	T	K	Y	V	F	A	N	A	E	F	I	I	P	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T	T	T							T	T	T	.	.	T									T	T												S	S	B														S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure															.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	149	150	.	.	.	.	.	.	.	.	.	160	.	.			.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.

	134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	S	P	D	N	R	T	L	W	V	P	A	L	K	Q	D	R	I	C	L	F	T	V	S	D	D	G	H	L	V	A	Q	D	P	A	E	V	T	T	V	E	G	A	G	P	R	H	M	V	F	H	P	N	E	Q	Y	A	Y	C	V	N	E	L	N	S	S	V	D	V	W	E	L	K	D	P	H	G	N	I	E
Query Conservation
Alig confidence																																.	.	.	.	.	.	.																																							.	.	.	.
Template Conservation																																.	.	.	.	.	.	.																																							.	.	.	.
Template Sequence	P	N	D	G	K	V	F	D	L	Q	D	E	N	S	Y	T	M	Y	N	A	I	D	A	E	T	M	E	M	A	F	Q	.	.	.	.	.	.	.	V	I	V	D	G	N	L	D	N	T	D	A	D	Y	T	G	R	F	A	A	A	T	C	Y	N	S	E	K	A	F	D	L	G	G	M	M	R	N	.	.	.	.
Template Known Secondary structure	S		S	S	S				T	T	S	T	T										T	T	T		S					.	.	.	.	.	.	.				S	S									S	S	S	S							S		T	T			S	S					T		S	.	.	.	.
Template Predicted Secondary structure																																.	.	.	.	.	.	.																																							.	.	.	.
Template SS confidence
	202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.								.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270

	214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	C	V	Q	T	L	D	M	M	P	E	N	F	S	D	T	R	W	A	A	D	I	H	I	T	P	D	G	R	H	L	Y	A	C	D	R	T	A	S	L	I	T	V	F	S	V	S	E	D	G	S	V	L	S	K	E	G	F	Q	P	T	E	T	Q	P	R	G	F	N	V	D	H	S	G	K	Y	L	I	A	A	G
Query Conservation
Alig confidence	.	.	.	.	.	.	.																																													.	.
Template Conservation	.	.	.	.	.	.	.																																													.	.
Template Sequence	.	.	.	.	.	.	.	E	R	D	W	V	V	V	F	D	I	H	A	V	E	A	A	V	K	A	G	D	F	I	T	L	G	D	S	K	T	P	V	L	D	G	R	K	K	D	G	K	D	S	K	.	.	F	T	R	Y	V	P	V	P	K	N	P	H	G	C	N	T	S	S	D	G	K	Y	F	I	A	A	G
Template Known Secondary structure	.	.	.	.	.	.	.	S																			T			B			T	T									S		B	T	T	B			S	.	.	S							S	S	S								T	T	S
Template Predicted Secondary structure	.	.	.	.	.	.	.																																													.	.
Template SS confidence
								271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.			.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.

	294	.	.	.	.	.	300	.	.	.	.	.	.	.										.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure															.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.
Query Sequence	Q	K	S	H	H	I	S	V	Y	E	I	V	G	E	.	.	.	.	.	.	.	.	.	Q	G	L	L	H	E	K	G	R	Y	A	V	G	Q	G	P	M	W	V	V	V	N	A
Query Conservation															.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	K	L	S	P	T	C	S	M	I	A	I	D	K	L	P	D	L	F	A	G	K	L	A	D	P	R	D	V	I	V	G	E	P	E	L	G	L	G	P	L	H	T	T	F	D	G
Template Known Secondary structure	T	T	S	S	B						G	G	G						T	T			S		G	G	G	G						B			S									S
Template Predicted Secondary structure
Template SS confidence
	342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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