Job Description P52697 Confidence 98.50% Date Thu Jan 5 12:06:01 GMT 2012 Rank 147 Aligned Residues 296 % Identity 15% Template c3s94A_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:low-density lipoprotein receptor-related protein 6; PDBTitle: crystal structure of lrp6-e1e2 Resolution 2.80 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Q	T	V	Y	I	A	S	P	E	S	Q	Q	I	H	V	W	N	L	N	H	E	G	A	L	T	L	T	Q	V	V	D	V	P	G	Q	V	Q	P	M	V	V	S	P	D	K	R	Y	L	Y	V	G	V	R	P	E	F	R	V	L	A	Y	R	I	A	P	D	D	G	A	L	T	F	A	A	E	S	A	L	P
Query Conservation
Alig confidence																							.	.	.	.					.	.																																														.	.	.
Template Conservation																							.	.	.	.					.	.																																														.	.	.
Template Sequence		H	G	L	I	Y	W	S	D	V	S	E	E	A	I	K	R	T	E	F	V	Q	.	.	.	.	N	V	V	V	.	.	S	G	L	L	S	P	D	G	L	A	C	D	W	L	G	E	K	L	Y	W	T	D	S	E	T	N	R	I	E	V	S	N	L	D	G	S	L	R	K	V	L	F	W	Q	E	.	.	.	L
Template Known Secondary structure		T	T							T	T	T	T										.	.	.	.					.	.	S	S		S									T	T	T	T							T	T	T	T							T	T	S		S							S	S	.	.	.
Template Predicted Secondary structure																							.	.	.	.					.	.																																														.	.	.
Template SS confidence
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.					.	.	.	.			.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.				.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	P	T	H	I	S	T	D	H	Q	G	Q	F	V	F	V	G	S	Y	N	A	G	N	V	S	V	T	R	L	E	D	G	L	P	V	G	V	V	D	V	V	E	G	L	D	G	C	H	S	A	N	I	S	P	D	N	R	T	L	W	V	P	A	L	K	Q	D	R	I	C	L	F	T	V	S	D	D	G	H
Query Conservation
Alig confidence																					.
Template Conservation																					.
Template Sequence		D	Q	P	R	A	I	A	L	D	P	S	S	G	F	M	Y	W	T	D	.	W	G	E	V	P	K	I	E	R	A	G	M	D	G	S	S	R	F	I	I	I	N	S	E	I	Y	W	P	N	G	L	T	L	D	Y	E	E	Q	K	L	Y	W	A	D	A	K	L	N	F	I	H	K	S	N	L	D	G	T	N	R
Template Known Secondary structure		S									T	T	T	T							.		S	S	S								T	T	S		S							S	S		S	S								T	T	T	T							T	T	T							S	S	S
Template Predicted Secondary structure																					.
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.		.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	V	A	Q	D	P	A	E	V	T	T	V	E	G	A	G	P	R	H	M	V	F	H	P	N	E	Q	Y	A	Y	C	V	N	E	L	N	S	S	V	D	V	W	E	L	K	D	P	H	G	N	I	E	C	V	Q	T	L	D	M	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	P	F	A	L	T	L	F	E	D	I	L	Y	W	T	D	W	S	T	H	S	I	L	A	C	N	K	Y	T	G	E	G	L	R	E	I	H	S	D	I	F	S	P	M	D	I	H	A	F	S	Q	Q	R	Q	P	N	A	T	N	P	C	G	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								S	S	S							T	T	T		S						S	S	S									S						S							G	G	G	S						T	T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																			217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
																																																																		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	E	N	F	S	D	T	R	W	A	A	D	I	H	I	T
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	N	G	G	C	S	H	L	C	L	M	S	P	V	K	P	F	Y	Q	C	A	C	P	T	G	V	K	L	L	E	N	G	K	T	C	K	D	G	A	T	E	L	L	L	L	A	R	R	T	D	L	R	R	I	S	L	D	T	P	D	F	T	D	I	V	L	Q	L	E	D	I	R	H	A	I	A	I	D	Y	D
Template Known Secondary structure		T	G	G	G		S	S						S	S	T	T	S							T	T			B		T	T	S	S		B		S	S		S								S	S							S	S	S	T	T									S			S	S
Template Predicted Secondary structure
Template SS confidence
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	D	G	R	H	L	Y	A	C	D	R	T	A	S	L	I	T	V	F	S	V	S	E	D	G	S	V	L	S	K	E	G	F	Q	P	T	E	T	Q	P	R	G	F	N	V	D	H	S	G	K	Y	L	I	A	A	G	Q	K	S	H	H	I	S	V	Y	E	I	V	G	E	Q	G	L	L	H	E	K	G	R	Y
Query Conservation
Alig confidence																																				.	.	.																																			.	.	.
Template Conservation																																				.	.	.																																			.	.	.
Template Sequence		P	V	E	G	Y	I	Y	W	T	D	D	E	V	R	A	I	R	R	S	F	I	D	G	S	G	S	Q	F	V	V	T	A	Q	I	.	.	.	A	H	P	D	G	I	A	V	D	W	V	A	R	N	L	Y	W	T	D	T	G	T	D	R	I	E	V	T	R	L	N	G	T	M	.	.	.	R	K	I	L	I	S
Template Known Secondary structure		T	T	T	T							T	T	T	T							T	T	S		S							S	S		.	.	.	S									T	T	T	T							T	T	T	T							T	T	S		S	.	.	.
Template Predicted Secondary structure																																				.	.	.																																			.	.	.
Template SS confidence
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.				.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.				.	.	.	440	.	.
		318	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	G	Q	G	P	M	W	V	V	V	N	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	D	L	E	E	P	R	A	I	V	L	D	P
Template Known Secondary structure		T	T			S								T
Template Predicted Secondary structure
Template SS confidence
		443	.	.	.	.	.	.	450	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions