Phyre 2 alignment of P52697 with c3s8vA

Job Description P52697
Confidence 98.88% Date Thu Jan 5 12:06:01 GMT 2012

Rank 136 Aligned Residues 314

% Identity 14% Template c3s8vA_

PDB info PDB header:signaling protein Chain: A: PDB Molecule:low-density lipoprotein receptor-related protein 6; PDBTitle: crystal structure of lrp6-dkk1 complex

Resolution 3.10 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	Q	T	V	Y	I	A	S	P	E	S	Q	Q	I	H	V	W	N	L	N	H	E	G	A	L	T	L	T	Q	V	V	D	V	P	G	Q	V	Q	P	M	V	V	S	P	D	K	R	Y	L	Y	V	G	V	R	P	E	F	R	V	L	A	Y	R	I	A	P	D	D	G	A	L	T	F	A	A	E	S	A	L	P
Query Conservation
Alig confidence																														.	.																																		.	.	.
Template Conservation																														.	.																																		.	.	.
Template Sequence	D	N	R	I	Y	W	T	D	I	S	L	K	T	I	S	R	A	F	M	N	G	S	A	L	E	H	V	V	E	.	.	F	G	L	D	Y	P	E	G	M	A	V	D	W	L	G	K	N	L	Y	W	A	D	T	G	T	N	R	I	E	V	S	K	L	.	.	.	D	G	Q	H	R	Q	V	L	V	W	K	D	L
Template Known Secondary structure	T	T							T	T	T	T							T	T	S		S							.	.	S	S		S									T	T	T	T							T	T	T	T							T	.	.	.	T	S		S							T	T
Template Predicted Secondary structure																														.	.																																		.	.	.
Template SS confidence
	673	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.			.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.				.	.	.	.	.	740	.	.	.	.	.	.	.

	82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	S	P	T	H	I	S	T	D	H	Q	G	Q	F	V	F	V	G	S	Y	N	A	G	N	V	S	V	T	R	L	E	D	G	L	P	V	G	V	V	D	V	V	E	G	L	D	G	C	H	S	A	N	I	S	P	D	N	R	T	L	W	V	P	A	L	K	Q	D	R	I	C	L	F	T	V	S	D	D	G	H
Query Conservation
Alig confidence																																										.	.
Template Conservation																																										.	.
Template Sequence	D	S	P	R	A	L	A	L	D	P	A	E	G	F	M	Y	W	T	E	W	G	G	K	P	K	I	D	R	A	A	M	D	G	S	E	R	T	T	L	V	P	.	.	N	V	G	R	A	N	G	L	T	I	D	Y	A	K	R	R	L	Y	W	T	D	L	D	T	N	L	I	E	S	S	N	M	L	G	L	N	R
Template Known Secondary structure										T	T	T	T								S	S	S								T	T	S		S							.	.	S		S		B							T	T	T	T							T	T	T	T							T	T	S		S
Template Predicted Secondary structure																																										.	.
Template SS confidence
	748	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.			.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.

	162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	L	V	A	Q	D	P	A	E	V	T	T	V	E	G	A	G	P	R	H	M	V	F	H	P	N	E	Q	Y	A	Y	C	V	N	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	E	V	I	A	D	D	L	P	H	P	F	G	L	T	Q	Y	Q	D	Y	I	Y	W	T	D	W	S	R	R	S	I	E	R	A	N	K	T	S	G	Q	N	R	T	I	I	Q	G	H	L	D	Y	V	M	D	I	L	V	F	H	S	S	R	Q	S	G	W	N	E	C	A	S	S	N	G	H	C	S	H	L	C	L
Template Known Secondary structure								S	S								S	S							T	T	T	T							T	T	T	S		S							S		S										T	T	T	S					G	G	G	T	G	G	G	G		S	S
Template Predicted Secondary structure
Template SS confidence
	826	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.

																							196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	N	S	S	V	D	V	W	E	L	K	D	P	H	G	N	I	E	C	V	Q	T	L	D	M	M	P	E	N	F	S	D	T	R	W	A	A	D	I	H	I	T	P	D	G	R	H	L	Y	A	C	D	R	T	A	S	L	I
Query Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	A	V	P	G	F	V	C	G	C	P	A	H	Y	S	L	N	A	D	N	R	T	C	S	A	P	T	T	F	L	L	F	S	Q	K	S	A	I	N	R	M	V	I	D	E	Q	P	D	I	I	L	P	I	H	S	L	R	N	V	R	A	I	D	Y	D	P	L	D	K	Q	L	Y	W	I	D	S	R	Q	N	M	I
Template Known Secondary structure											T	T					T	T	S	S						S	S							S	S																					S									T	T	T	T								T	T	T
Template Predicted Secondary structure
Template SS confidence
	906	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.

	254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure
Query SS confidence
Query Sequence	T	V	F	S	V	S	E	D	G	S	V	L	S	K	E	G	F	Q	P	T	E	T	Q	P	R	G	F	N	V	D	H	S	G	K	Y	L	I	A	A	G	Q	K	S	H	H	I	S	V	Y	E	I	V	G	E	Q	G	L	L	H	E	K	G	R	Y	A	V	G	Q	G	P	M	W	V	V	V	N	A
Query Conservation
Alig confidence																	.	.	.	.	.																																			.	.	.
Template Conservation																	.	.	.	.	.																																			.	.	.
Template Sequence	R	K	A	Q	E	D	G	S	Q	G	F	T	V	V	V	S	.	.	.	.	.	I	Q	P	Y	D	L	S	I	D	I	Y	S	R	Y	I	Y	W	T	C	E	A	T	N	V	I	N	V	T	R	L	D	G	R	S	.	.	.	V	G	V	V	L	K	G	E	Q	D	R	P	R	A	I	V	V	N	P
Template Known Secondary structure					T	T	S	T	T								.	.	.	.	.										T	T	T	T							T	T	T	T							S	S	S			.	.	.								T	T										T
Template Predicted Secondary structure																	.	.	.	.	.																																			.	.	.
Template SS confidence
	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.						.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.				1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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