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Job DescriptionP52697
Confidence99.48%DateThu Jan 5 12:06:01 GMT 2012
Rank98Aligned Residues230
% Identity11%Templatec3qqzA_
PDB info PDB header:metal binding proteinChain: A: PDB Molecule:putative uncharacterized protein yjik; PDBTitle: crystal structure of the c-terminal domain of the yjik protein from2 escherichia coli cft073
Resolution2.55 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   25....30.........40.........50.........60.........70.........80.........90.........100....
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Query Sequence  ALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSPTHISTDHQGQFVFVGSYNAG
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Template Sequence  TIDGKEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEXTT. . . NGDLIRTIPLDFVKDLETIEYIGDNQF. VISDERDY
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   84.....90.........100.........110.........120.... .....130.........140.........150. ........
 
   105....110.........120.........130.........140.........150.........160.........170.........180....
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Query Sequence  NVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFH
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Template Sequence  AIYVISLTPNSEVKIL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . KKIKIPLQESPTNCGFEGLAYS
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   160.........170..... ....180.........190.......
 
   185....190.........200.........210.........220.........230.........240.........250.........260....
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Query Sequence  PNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSV
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Template Sequence  RQDHTFWF. FKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIG
Template Known Secondary structure  TTTT.SSSSTT
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   198.200..... ....210.........220.........230.........240.........250.........260.........270......
 
   265....270.... .....280.........290.........300...
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Query Sequence  LSKEGFQPTE. . . . . TQPRGFNVDHSGKYLIAAGQKSHHISVYE
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Template Sequence  EXSLTKGSRGLSHNIKQAEGVAXDASGN. IYIVSEP. NRFYRFT
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STTGGG
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   277..280.........290.........300.... .....310. .......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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