Job Description P52697 Confidence 99.34% Date Thu Jan 5 12:06:01 GMT 2012 Rank 113 Aligned Residues 302 % Identity 10% Template c3pe7A_ PDB info PDB header:lyase Chain: A: PDB Molecule:oligogalacturonate lyase; PDBTitle: oligogalacturonate lyase in complex with manganese Resolution 1.65 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	T	V	Y	I	A	S	P	E	S	Q	Q	I	H	V	W	N	L	N	H	E	G	A	L	T	L	T	Q	V	V	D	V	P	G	Q	V	Q	P	M	V	V	S	P	D	K	R	Y	L	Y	V	G	V	R	P	E	F	R	V	L	A	Y	R	I	A	P	D	D	G	A	L	T	F	A	A	E	S	A	L	P	G
Query Conservation
Alig confidence																																																		.
Template Conservation																																																		.
Template Sequence		S	K	L	L	F	G	G	A	F	D	G	P	W	N	Y	Y	L	L	D	L	N	T	Q	V	A	T	Q	L	T	E	G	R	G	D	N	T	F	G	G	F	L	S	P	D	D	D	A	L	.	F	Y	V	K	D	G	R	N	L	M	R	V	D	L	A	T	L	E	E	N	V	V	Y	Q	V	P	A	E	W	V	G
Template Known Secondary structure										T	T	S	S								T	T	T									S	S		B		S	S	S					T	T	S	S			.					T	T	T							T	T	T											T	T
Template Predicted Secondary structure																																																		.
Template SS confidence
		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.		.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.								110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.
Query Sequence		S	P	T	H	I	S	T	D	H	Q	G	Q	F	V	F	V	G	S	Y	N	A	G	N	V	S	V	T	.	.	.	.	.	.	.	R	L	E	D	G	L	P	V	G	V	V	D	V	V	E	G	L	D	G	C	H	S	A	N	I	S	P	D	N	R	T	L	W	V	P	A	L	K	Q	D	R	I	C	L	F	T
Query Conservation																													.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	G	T	W	V	A	N	S	D	C	T	K	L	V	G	I	E	I	R	R	E	D	W	V	P	L	T	D	W	K	K	F	H	E	F	Y	F	T	K	P	C	C	R	L	M	R	V	D	L	K	T	G	E	S	T	V	I	L	Q	E	N	Q	W	L	G	H	P	I	Y	R	P	Y	D	D	S	T	V	A	F	C
Template Known Secondary structure									T	T	S	S									G	G	G						S								G	G	G											T	T	T										S	S									T	T
Template Predicted Secondary structure
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.				.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure																																																				.	.	.
Query SS confidence																																																				.	.	.
Query Sequence		V	S	D	D	G	H	L	V	A	Q	D	P	A	E	V	T	T	V	E	G	A	G	P	R	H	M	V	F	H	P	N	E	Q	Y	A	Y	C	V	N	E	L	N	S	S	V	D	V	W	E	L	.	.	.	K	D	P	H	G	N	I	E	C	V	Q	T	L	D	M	M	P	E	N	F	S	D	T	R	W	A	A
Query Conservation																																																				.	.	.
Alig confidence																																																				.	.	.
Template Conservation
Template Sequence		H	E	G	P	H	D	L	V	D	A	R	M	W	L	I	N	E	D	G	T	N	M	R	K	V	K	T	H	A	E	G	E	S	C	T	H	E	F	W	V	P	D	G	S	A	L	V	Y	V	S	Y	L	K	G	S	P	D	R	F	I	Y	S	A	D	P	E	T	L	E	N	R	Q	L	T	S	M	P	A	C	S
Template Known Secondary structure				S		T	T	T	S	S		S						T	T	S						S					T	T										T	T	S	S									T	T											T	T	T
Template Predicted Secondary structure
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250		.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.										.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure																				.																													.	.	.	.	.	.	.	.	.
Query SS confidence																				.																													.	.	.	.	.	.	.	.	.
Query Sequence		D	I	H	I	T	P	D	G	R	H	L	Y	A	C	D	R	T	A	.	S	L	I	T	V	F	S	V	S	E	D	G	S	V	L	S	K	E	G	F	Q	P	T	E	T	Q	P	R	.	.	.	.	.	.	.	.	.	G	F	N	V	D	H	S	G	K	Y	L	I	A	A	G	Q	K	S	H	H	I	S	V	Y
Query Conservation																				.																													.	.	.	.	.	.	.	.	.
Alig confidence																				.																													.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	L	M	S	N	Y	D	G	S	L	M	V	G	D	G	S	D	A	E	N	D	P	F	L	Y	V	F	N	M	K	N	G	T	Q	H	R	V	A	R	H	D	T	S	W	K	V	F	E	G	D	R	Q	V	T	H	P	H	P	S	F	T	P	D	D	K	Q	I	L	F	T	S	D	V	H	G	K	P	A	L	Y
Template Known Secondary structure							T	T	S	S																				T	T	T	T															B	T	T	B	S	S	T	T								T	T	S	S								T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
		303	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		379	380	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions