Job Description P52697 Confidence 72.76% Date Thu Jan 5 12:06:01 GMT 2012 Rank 178 Aligned Residues 144 % Identity 9% Template c3pbpD_ PDB info PDB header:transport protein,structural protein Chain: D: PDB Molecule:nucleoporin nup82; PDBTitle: structure of the yeast heterotrimeric nup82-nup159-nup116 nucleoporin2 complex Resolution 2.60 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.			.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.																																		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.																																		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	T	V	Y	I	A	S	P	E	S	Q	Q	I	H	V	W	N	L	N	H	E	G	A	L	T	L	T	Q	V	V	D	V	P	.	.	G	Q	V	Q	P	M	V	V	S	P	D	K	R	Y	L	Y	V	G	V	R	P	E	F	R	V	L	A	Y	R	I	A	P	D	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																			.	.																																		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.																										.	.																				.	.													.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.																																															.	.
Template Sequence		R	I	V	F	I	.	.	.	Q	D	N	I	I	R	W	Y	N	V	L	T	D	S	L	Y	H	S	L	N	F	S	R	H	L	V	L	D	D	T	F	H	V	I	S	S	T	S	G	D	L	L	C	L	F	N	.	.	D	N	E	I	F	V	X	E	V	P	W	G	Y	S	N	V	E	D	V	S	I	Q	D	A
Template Known Secondary structure							.	.	.		T	T							T	T	T		S	S							T	T	T					T	T							T	T	S	S							.	.	S	S									T	T		S										T
Template Predicted Secondary structure							.	.	.																																															.	.
Template SS confidence
		34	.	.	.	.				.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.			.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
			69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.			.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure		.																										.	.
Query SS confidence		.																										.	.
Query Sequence		.	D	G	A	L	T	F	A	A	E	S	A	L	P	G	S	P	T	H	I	S	T	D	H	Q	G	.	.	Q	F	V	F	V	G	S	Y	N	A	G	N	V	S	V	T	R	L	E	D	G	L	P	V	G	V	V	D	V	V	E	G	L	D	G	C	H	S	A	N	I	S	P	D	N	R	T	L	W	V	P	A
Query Conservation		.																										.	.
Alig confidence		.																										.	.
Template Conservation
Template Sequence		F	Q	I	F	H	Y	S	I	D	E	E	E	P	K	S	S	I	K	K	V	L	F	H	P	K	S	Y	R	D	S	C	I	V	V	L	K	E	D	D	T	I	T	X	F	D	I	L	N	S	Q	E	K	P	I	V	L	N	K	P	N	N	S	F	G	L	D	A	R	V	N	D	I	T	D	L	E	F	S	K	D
Template Known Secondary structure		T							G	G	G														T	T	B	G	G	G								T	T	S							T	T		T	T	S						S							S	S		S	S											T	T
Template Predicted Secondary structure
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
		146	.	.	.	150	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	Q	D	R	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	L	T	L	Y	C
Template Known Secondary structure		S	S
Template Predicted Secondary structure
Template SS confidence
		191	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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