Job Description P52697 Confidence 97.46% Date Thu Jan 5 12:06:01 GMT 2012 Rank 154 Aligned Residues 293 % Identity 11% Template c3p1lA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:lipoprotein yfgl; PDBTitle: crystal structure of escherichia coli bamb, a lipoprotein component of2 the beta-barrel assembly machinery complex, native crystals. Resolution 2.60 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.							40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.
Query Sequence		K	Q	T	V	Y	I	A	S	P	E	S	Q	Q	I	H	V	W	N	L	N	H	E	G	A	L	T	L	T	Q	V	V	D	V	P	G	Q	V	Q	.	.	.	.	.	.	P	M	V	V	S	P	D	K	R	Y	L	Y	V	G	V	R	P	E	F	R	V	L	A	Y	R	I	A	P	D	D	G	A	L	T	F	A
Query Conservation																																								.	.	.	.	.	.
Alig confidence							.																																	.	.	.	.	.	.																	.
Template Conservation							.																																																							.
Template Sequence		D	N	V	V	Y	.	A	A	D	R	A	G	L	V	K	A	L	N	A	D	D	G	K	E	I	W	S	V	S	L	A	E	K	D	G	W	F	S	K	E	P	A	L	L	S	G	G	V	T	V	S	G	G	H	V	Y	I	G	S	E	.	K	A	Q	V	Y	A	L	N	T	S	D	G	T	V	A	W	Q	T	K
Template Known Secondary structure		T	T				.				T	T	S							T	T	T														S	S	S															T	T							T	.	T	S							T	T	T
Template Predicted Secondary structure							.																																																							.
Template SS confidence
		69	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.		.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	S	A	L	P	G	S	P	T	H	I	S	T	D	H	Q	G	Q	F	V	F	V	G	S	Y	N	A	G	N	V	S	V	T	R	L	E	D	G	L	P	V	G	V	V	D	V	V	E	G	L	D	G	C	H	S	A	N	I	S	P	D	N	R	T	L	W	V	P	A	L	K	Q	D	R	I	C	L	F	T
Query Conservation
Alig confidence												.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.
Template Sequence		V	A	G	E	A	L	S	R	P	V	.	.	.	.	.	.	V	S	D	G	L	V	L	I	H	T	S	N	G	Q	L	Q	A	L	N	E	A	D	G	A	V	K	W	T	V	N	L	D	M	P	S	L	S	L	R	G	E	S	A	P	T	T	A	F	G	A	A	V	V	G	G	D	N	G	R	V	S	A	V	L
Template Known Secondary structure			S	S				S				.	.	.	.	.	.			T	T							T	T	S							T	T	T													S	S			S	S								T	T							T	T	S
Template Predicted Secondary structure												.	.	.	.	.	.
Template SS confidence
		147	.	.	150	.	.	.	.	.	.							.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	D	D	G	H	L	V	A	Q	D	P	A	E	V	T	T	V	E	G	A	G	P	R	H	M	V	F	H	P	N	E	Q	Y	A	Y	C	V	N	E	L	N	S	S	V	D	V	W	E	L	K	D	P	H	G	N	I	E	C	V	Q	T	L	D	M	M	P	E	N	F	S	D	T	R	W	A	A	D	I	H
Query Conservation
Alig confidence																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	E	Q	G	Q	M	I	W	Q	Q	R	I	S	Q	A	T	G	S	T	E	I	D	R	L	S	D	V	D	T	T	P	V	V	V	N	G	V	V	F	A	L	A	Y	N	G	N	L	T	A	L	D	L	R	S	G	Q	I	M	W	K	R	E	L	G	S	.	.	.	.	.	.	.	.	.	.	.	.	.	V	N
Template Known Secondary structure		T	T	T	T									S			S		S	S				T	T											T	T							T	T	S							T	T	T								T	T			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.														.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	P	D	G	R	H	L	Y	A	C	D	R	T	A	S	L	I	T	V	F	S	V	S	E	D	G	S	V	L	S	K	E	G	F	Q	P	T	E	T	Q	P	R	G	F	N	V	D	H	S	G	K	Y	L	I	A	A	G	Q	K	S	H	H	I	S	V	Y	E	I	V	G	E	Q	G	L	L	H	E	K	G
Query Conservation
Alig confidence																																					.	.	.	.																						.							.	.						.	.
Template Conservation																																					.	.	.	.																						.							.	.						.	.
Template Sequence		D	F	I	V	D	G	N	R	I	Y	L	V	D	Q	N	D	R	V	M	A	L	T	I	D	G	G	V	T	L	W	T	Q	S	D	L	.	.	.	.	L	H	R	L	L	T	S	P	V	L	Y	N	G	N	L	V	V	G	D	S	E	.	G	Y	L	H	W	I	.	.	N	V	E	D	G	.	.	R	F	V	A
Template Known Secondary structure							S	S							T	T								T	T	T									T	T	.	.	.	.	T	T	S									T	T							T	T	.	S						.	.		T	T	T		.	.
Template Predicted Secondary structure																																					.	.	.	.																						.							.	.						.	.
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.					.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.		.	.	.	.	.	.			350	.	.	.	.			.	.	.	.
		316	.	.	.	320	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Y	A	V	G	Q	G	P	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	Q	K	V	D	S	S	G	F
Template Known Secondary structure							S	S		B
Template Predicted Secondary structure
Template SS confidence
		359	360	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions