Job Description P52697 Confidence 71.53% Date Thu Jan 5 12:06:01 GMT 2012 Rank 179 Aligned Residues 318 % Identity 6% Template c3ottB_ PDB info PDB header:transcription Chain: B: PDB Molecule:two-component system sensor histidine kinase; PDBTitle: crystal structure of the extracellular domain of the putative one2 component system bt4673 from b. thetaiotaomicron Resolution 2.30 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.						.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.
Query SS confidence																																						.	.	.	.	.
Query Sequence		K	Q	T	V	Y	I	A	S	P	E	S	Q	Q	I	H	V	W	N	L	N	H	E	G	A	L	T	L	T	Q	V	V	D	V	P	G	Q	.	.	.	.	.	V	Q	P	M	V	V	S	P	D	K	R	Y	L	Y	V	G	V	R	P	E	F	R	V	L	A	Y	R	I	A	P	D	D	G	A	L	T	F	A	A
Query Conservation																																						.	.	.	.	.
Alig confidence										.	.																											.	.	.	.	.																				.	.	.	.
Template Conservation										.	.																																																			.	.	.	.
Template Sequence		N	G	D	L	L	A	G	T	.	.	D	N	G	L	Y	V	Y	H	N	D	T	T	P	L	Q	H	I	I	H	D	S	R	N	I	Q	S	L	T	N	N	I	I	W	N	I	F	A	D	Q	E	H	N	I	W	L	G	T	D	Y	G	.	.	.	.	I	S	L	S	R	Y	N	S	L	Q	F	I	P	I	S	Q
Template Known Secondary structure		T	S							.	.	T	T								T	T	S									T	T		T	T	S		S		S									T	T								S	S	S	.	.	.	.														T
Template Predicted Secondary structure										.	.																																																			.	.	.	.
Template SS confidence
		269	270	.	.	.	.	.	.			.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.					.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130				.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																																																								.	.	.
Query SS confidence																																																								.	.	.
Query Sequence		E	S	A	L	P	G	S	P	T	H	I	S	T	D	H	Q	G	Q	F	V	F	V	G	S	Y	N	A	G	N	V	S	V	T	R	L	E	D	G	L	P	V	G	V	V	D	V	V	E	G	L	D	G	C	H	.	.	.	S	A	N	I	S	P	D	N	R	T	L	W	V	P	A	L	K	Q	D	R	I	C	L
Query Conservation																																																								.	.	.
Alig confidence																																																								.	.	.
Template Conservation
Template Sequence		I	T	G	T	G	D	G	N	Q	F	Y	S	L	F	R	D	S	K	G	F	Y	W	F	G	G	A	N	G	L	I	R	F	T	D	P	A	G	E	R	H	D	A	I	W	Y	R	M	G	D	K	T	Y	P	L	S	H	N	R	I	R	H	I	Y	E	D	K	E	Q	Q	L	W	I	A	T	D	G	S	I	N	R
Template Known Secondary structure				S	S					B								T	T	S							T	T						S		T	T			S								T	T		S	S	S			S		S									T	T	S							T	T
Template Predicted Secondary structure
Template SS confidence
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	T	V	S	D	D	G	H	L	V	A	Q	D	P	A	E	V	T	T	V	E	G	A	G	P	R	H	M	V	F	H	P	N	E	Q	Y	A	Y	C	V	N	E	L	N	S	S	V	D	V	W	E	L	K	D	P	H	G	N	I	E	C	V	Q	T	L	D	M	M	P	E	N	F	S	D	T	R	W	A	A	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	D	Y	A	T	R	Q	F	I	H	Y	N	I	V	D	N	T	G	T	Y	N	T	N	W	T	Y	Y	I	F	E	D	T	A	G	Q	L	W	I	S	T	C	L	G	G	I	F	V	V	D	K	H	K	L	M	Q	S	T	S	G	Q	Y	I	A	E	Q	N	Y	S	V	H	N	G	L	S	G	M	F	I	N	Q
Template Known Secondary structure				T	T	T	T										T	T	S			B		S	S								T	T	S							S	S	S															S	S	S				S					T	T	T	T		S		S
Template Predicted Secondary structure
Template SS confidence
		424	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	H	I	T	P	D	G	R	H	L	Y	A	C	D	R	T	A	S	L	I	T	V	F	S	V	S	E	D	G	S	V	L	S	K	E	G	F	Q	P	T	E	T	Q	P	R	G	F	N	V	D	H	S	G	K	Y	L	I	A	A	G	Q	K	S	H	H	I	S	V	Y	E	I	V	G	E	Q	G	L	L	H	E
Query Conservation
Alig confidence										.																																														.									.	.	.	.
Template Conservation										.																																														.									.	.	.	.
Template Sequence		I	I	P	D	N	E	G	N	.	V	W	V	L	L	Y	N	N	K	G	I	D	K	I	N	P	R	T	R	E	V	T	K	L	F	A	D	E	L	T	G	E	K	S	P	N	Y	L	L	C	D	E	D	G	L	.	L	W	V	G	F	H	G	G	.	.	.	.	V	M	R	I	N	P	K	D	E	S	Q	Q	S
Template Known Secondary structure						S	S	S		.						T	T		S	S						T	T	T	T						S	T	T	T	S	S	G	G	G									T	T	S		.						T	T		.	.	.	.						T	T	T	T
Template Predicted Secondary structure										.																																														.									.	.	.	.
Template SS confidence
		504	.	.	.	.	.	510	.		.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.		.	.	.	560	.	.	.	.					.	.	.	.	.	570	.	.	.	.	.	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	G	R	Y	A	V	G	Q	G	P	M	W	V	V	V	N	A	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	S	F	G	S	F	S	N	N	E	I	L	S	M	T	C	V	K
Template Known Secondary structure					S	S		S	S										T
Template Predicted Secondary structure
Template SS confidence
		578	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions