Phyre 2 alignment of P52697 with c3mmyE

Job Description P52697
Confidence 99.79% Date Thu Jan 5 12:06:01 GMT 2012

Rank 34 Aligned Residues 304

% Identity 12% Template c3mmyE_

PDB info PDB header:nuclear protein Chain: E: PDB Molecule:mrna export factor; PDBTitle: structural and functional analysis of the interaction between the2 nucleoporin nup98 and the mrna export factor rae1

Resolution 1.65 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.				.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																																								.	.	.
Query SS confidence																																								.	.	.
Query Sequence	A	S	P	E	S	Q	Q	I	H	V	W	N	L	N	H	E	G	A	L	T	L	T	Q	V	V	D	V	P	G	Q	V	Q	P	M	V	V	S	P	D	.	.	.	K	R	Y	L	Y	V	G	V	R	P	E	F	R	V	L	A	Y	R	I	A	P	D	D	G	A	L	T	F	A	A	E	S	A	L	P	G	S	P
Query Conservation																																								.	.	.
Alig confidence																																								.	.	.					.																											.
Template Conservation																																															.																											.
Template Sequence	S	G	F	G	T	S	G	T	S	M	F	T	D	N	H	N	P	M	K	D	I	E	V	T	S	S	P	D	D	S	I	G	C	L	S	F	S	P	P	T	L	P	G	N	F	L	.	I	A	G	S	W	A	N	D	V	R	C	W	E	V	Q	D	S	G	Q	T	I	P	K	A	Q	Q	.	M	H	T	G	P	V
Template Known Secondary structure	S													S	S		T	T						S	S			S	S										T	T	S	S	S				.					T	T	S									T	T	S									.			S	S
Template Predicted Secondary structure																																															.																											.
Template SS confidence
	8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.		80	.	.	.	.	.

	85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	H	I	S	T	D	H	Q	G	Q	F	V	F	V	G	S	Y	N	A	G	N	V	S	V	T	R	L	E	D	G	L	P	V	G	V	V	D	V	V	E	G	L	D	G	C	H	S	A	N	I	S	P	D	N	R	T	L	W	V	P	A	L	K	Q	D	R	I	C	L	F	T	V	S	D	D	G	H	L	V	A
Query Conservation
Alig confidence																				.	.	.
Template Conservation																				.	.	.
Template Sequence	L	D	V	C	W	S	D	D	G	S	K	V	F	T	A	S	C	D	K	.	.	.	T	A	K	M	W	D	L	S	S	N	Q	A	I	Q	I	A	Q	H	D	A	P	V	K	T	I	H	W	I	K	A	P	N	Y	S	C	V	M	T	G	S	W	D	K	T	L	K	F	W	D	T	R	S	S	N	P	M	M	V
Template Known Secondary structure							T	T	S	S							T	T	S	.	.	.							T	T	T	T									S	S											S	S									T	T	S							S	S		S	S		S
Template Predicted Secondary structure																				.	.	.
Template SS confidence
	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.				.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.

	165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	Q	D	P	A	E	V	T	T	V	E	G	A	G	P	R	H	M	V	F	H	P	N	E	Q	Y	A	Y	C	V	N	E	L	N	S	S	V	D	V	W	E	L	K	D	P	H	G	N	I	E	C	V	Q	T	L	D	M	M	P	E	N	F	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	L	Q	L	P	E	R	C	Y	C	A	D	V	I	Y	P	M	A	V	V	A	T	A	E	R	G	L	I	V	Y	Q	L	E	N	Q	P	S	E	F	R	R	I	E	S	P	L	K	H	Q	H	R	C	V	A	I	F	K	D	K	Q	N	K	P	T	G	F	A	L	G	S	I	E	G	R	V	A	I	H	Y	I	N
Template Known Secondary structure				S	S									T	T							G	G	G								S	S	S										S		S	S											T	T	S										S	S	S							S	S
Template Predicted Secondary structure
Template SS confidence
	167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.

																						227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	T	R	W	A	A	D	I	H	I	T	P	D	G	R	H	L	Y	A	C	D	R	T	A	S	L	I	T	V	F	S	V	S	E	D	G	S	V	L	S	K	E	G	F	Q	P	T	E	T	Q	P	R	G	F	N	V	D	H	S
Query Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.																												.	.	.
Template Conservation																																							.																												.	.	.
Template Sequence	P	P	N	P	A	K	D	N	F	T	F	K	C	H	R	S	N	S	A	P	Q	D	I	Y	A	V	N	G	I	A	F	H	P	V	H	G	T	L	.	A	T	V	G	S	D	G	R	F	S	F	W	D	K	D	A	R	T	K	L	K	T	S	E	Q	L	D	.	.	.	Q	P	I	S	A	C	C	F	N	H	N
Template Known Secondary structure		S						S						S																			T	T	T				.					T	T	S							T	T	T	T										S	.	.	.	S									T	T
Template Predicted Secondary structure																																							.																												.	.	.
Template SS confidence
	247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.		.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.				.	.	.	.	.	.	.	.	320	.	.

	286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	K	Y	L	I	A	A	G	Q	K	S	H	H	I	S	V	Y	E	I	V	G	E	Q	G	L	L	H	E	K	G	R	Y	A	V	G	Q
Query Conservation
Alig confidence											.
Template Conservation											.
Template Sequence	G	N	I	F	A	Y	A	S	S	Y	.	D	W	S	K	G	H	E	F	Y	N	P	Q	K	K	N	Y	I	F	L	R	N	A	A	E	E
Template Known Secondary structure	S	S									.		S	T	T		G	G	G			T	T	S										T	T	T
Template Predicted Secondary structure											.
Template SS confidence
	327	.	.	330	.	.	.	.	.	.		.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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