Job Description P52697 Confidence 99.78% Date Thu Jan 5 12:06:01 GMT 2012 Rank 38 Aligned Residues 280 % Identity 10% Template c3mkqA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:coatomer beta'-subunit; PDBTitle: crystal structure of yeast alpha/betaprime-cop subcomplex of the copi2 vesicular coat Resolution 2.50 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Q	T	V	Y	I	A	S	P	E	S	Q	Q	I	H	V	W	N	L	N	H	E	G	A	L	T	L	T	Q	V	V	D	V	P	G	Q	V	Q	P	M	V	V	S	P	D	K	R	Y	L	Y	V	G	V	R	P	E	F	R	V	L	A	Y	R	I	A	P	D	D	G	A	L	T	F	A	A	E	S	A	L	P
Query Conservation
Alig confidence																															.	.																			.																											.	.	.
Template Conservation																															.	.																			.																											.	.	.
Template Sequence		T	E	P	W	V	L	T	T	L	Y	S	G	R	V	E	I	W	N	Y	E	T	Q	V	E	V	R	S	I	Q	.	.	V	T	E	T	P	V	R	A	G	K	F	I	A	R	K	N	W	I	.	I	V	G	S	D	D	F	R	I	R	V	F	N	Y	N	T	G	E	K	V	V	D	F	E	A	H	.	.	.	P
Template Known Secondary structure		S	S	S							T	T	S							T	T	T	T								.	.			S	S									G	G	G	T			.					T	T	S							T	T	T											.	.	.	S
Template Predicted Secondary structure																															.	.																			.																											.	.	.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.			.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.				.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	P	T	H	I	S	T	D	H	Q	G	Q	F	V	F	V	G	S	Y	N	A	G	N	V	S	V	T	R	L	E	D	G	L	P	V	G	V	V	D	V	V	E	G	L	D	G	C	H	S	A	N	I	S	P	D	N	R	T	L	W	V	P	A	L	K	Q	D	R	I	C	L	F	T	V	S	D	D	G	H
Query Conservation
Alig confidence																					.													.
Template Conservation																					.													.
Template Sequence		D	Y	I	R	S	I	A	V	H	P	T	K	P	Y	V	L	S	G	S	.	D	D	L	T	V	K	L	W	N	W	E	N	.	N	W	A	L	E	Q	T	F	E	G	H	E	H	F	V	M	C	V	A	F	N	P	K	D	P	S	T	F	A	S	G	C	L	D	R	T	V	K	V	W	S	L	G	Q	S	T	P
Template Known Secondary structure		S									S	S	S	S							.	T	T	S							G	G	G	.	T	S										S	S									T	T										T	T	S							T	T		S	S
Template Predicted Secondary structure																					.													.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.		.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	A	Q	D	P	A	E	V	T	T	V	E	G	A	G	P	R	H	M	V	F	H	P	N	E	Q	Y	A	Y	C	V	N	E	L	N	S	S	V	D	V	W	E	L	K	D	P	H	G	N	I	E	C	V	Q	T	L	D	M	M	P	E	N	F	S	D	T	R	W	A	A	D	I	H	I	T	P	D	G	R
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	F	T	L	T	T	G	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	R	G	V	N	Y	V	D	Y	Y	P	L	P	D	K	P	Y	M	I	T	A	S	D	D	L	T	I	K	I	W	D	Y	Q	T	K	S	C	V	A	T	L	E	G	H	M	S	N	V	S	F	A	V	F	H	P	T	L	P
Template Known Secondary structure		S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T										S	T	T									T	T	S							T	T	T	T										S	S									S	S	S	S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		176	.	.	.	180	.	.	.															.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	L	Y	A	C	D	R	T	A	S	L	I	T	V	F	S	V	S	E	D	G	S	V	L	S	K	E	G	F	Q	P	T	E	T	Q	P	R	G	F	N	V	D	H	S	G	K	Y	L	I	A	A	G	Q	K	S	H	H	I	S	V	Y	E	I	V	G	E
Query Conservation
Alig confidence				.																												.	.	.
Template Conservation				.																												.	.	.
Template Sequence		I	I	.	I	S	G	S	E	D	G	T	L	K	I	W	N	S	S	T	Y	K	V	E	K	T	L	N	V	G	L	.	.	.	E	R	S	W	C	I	A	T	H	P	T	G	R	K	N	Y	I	A	S	G	F	D	N	G	F	T	V	L	S	L	G	N	D
Template Known Secondary structure				.					T	T	S							T	T	T		S								S	S	.	.	.	S	S								T	T		G	G	G							T	T								S
Template Predicted Secondary structure				.																												.	.	.
Template SS confidence
		242	.		.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270				.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions