Job Description P52697 Confidence 99.65% Date Thu Jan 5 12:06:01 GMT 2012 Rank 72 Aligned Residues 281 % Identity 14% Template c3iz6a_ PDB info PDB header:ribosome Chain: A: PDB Molecule:40s ribosomal protein sa (s2p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome Resolution 5.50 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	N	L	N	H	E	G	A	L	T	L	T	Q	V	V	D	V	P	G	Q	V	Q	P	M	V	V	S	P	D	K	R	Y	L	Y	V	G	V	R	P	E	F	R	V	L	A	Y	R	I	A	P	D	D	G	A	L	T	F	A	A	E	S	A	L	P	G	S	P	T	H	I	S	T	D	H	Q	G	Q	F	V	F
Query Conservation
Alig confidence															.	.																			.																		.	.	.	.
Template Conservation															.	.																			.																		.	.	.	.
Template Sequence		F	N	P	T	D	L	V	C	C	R	T	L	Q	.	.	G	H	S	G	K	V	Y	S	L	D	W	T	P	E	K	N	W	I	.	V	S	A	S	Q	D	G	R	L	I	V	W	N	A	L	T	S	.	.	.	.	Q	K	T	H	A	I	K	L	H	C	P	W	V	M	E	C	A	F	A	P	N	G	Q	S	V
Template Known Secondary structure															.	.			S	S									T	T	S	S			.					T	T	S							T	T	T	T	.	.	.	.											T	T								T	T	S	S
Template Predicted Secondary structure															.	.																			.																		.	.	.	.
Template SS confidence
		51	.	.	.	.	.	.	.	.	60	.	.	.			.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.		.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.					.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.					.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure																															.	.	.	.
Query SS confidence																															.	.	.	.
Query Sequence		V	G	S	Y	N	A	G	N	V	S	V	T	R	L	E	D	G	L	P	V	G	V	V	D	V	V	E	G	L	.	.	.	.	D	G	C	H	S	A	N	I	S	P	D	N	R	T	L	W	V	P	A	L	K	Q	D	R	I	C	L	F	T	V	S	D	D	G	H	L	V	A	Q	D	P	A	E	V	T	T	V
Query Conservation																															.	.	.	.
Alig confidence																															.	.	.	.
Template Conservation
Template Sequence		A	C	G	G	L	D	S	A	C	S	I	F	N	L	S	S	Q	A	D	R	D	G	N	M	P	V	S	R	V	L	T	G	H	K	G	Y	A	S	S	C	Q	Y	V	P	D	Q	E	T	R	L	I	T	G	S	G	D	Q	T	C	V	L	W	D	V	T	T	G	Q	R	I	S	I	F	G	S	E	F	P	S	G
Template Known Secondary structure						S	S	S											S	S				S	S	T	T			B					S	S						B			S	S	S	S	S							T	T	S							T	T	T											S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	G	A	G	P	R	H	M	V	F	H	P	N	E	Q	Y	A	Y	C	V	N	E	L	N	S	S	V	D	V	W	E	L	K	D	P	H	G	N	I	E	C	V	Q	T	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	T	A	D	V	L	S	L	S	I	N	S	L	N	A	N	M	F	I	S	G	S	C	D	T	T	V	R	L	W	D	L	R	I	T	S	R	A	V	R	T	Y	H	G	H	E	G	D	I	N	S	V	K	F	F	P	D	G	Q	R	F	G	T	G	S	D	D	G	T	C	R	L	F	D	M	R	T	G	H	Q
Template Known Secondary structure				S									S	S	S									T	T	S							T	T	T	T											S	S									T	T	S	S							S	S	S							T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
								220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.		.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure		.	.	.	.	.	.																																																						.
Query SS confidence		.	.	.	.	.	.																																																						.
Query Sequence		.	.	.	.	.	.	M	M	P	E	N	F	S	D	T	R	W	A	A	D	I	H	I	T	P	D	G	R	H	L	Y	A	C	D	R	T	A	S	L	I	T	V	F	S	V	S	E	D	G	S	V	L	S	K	E	G	F	Q	P	.	T	E	T	Q	P	R	G	F	N	V	D	H	S	G	K	Y	L	I	A	A
Query Conservation		.	.	.	.	.	.																																																						.
Alig confidence		.	.	.	.	.	.																									.																													.
Template Conservation																																.
Template Sequence		L	Q	V	Y	N	R	E	P	D	R	N	D	N	E	L	P	I	V	T	S	V	A	F	S	I	S	G	R	L	L	.	F	A	G	Y	S	N	G	D	C	Y	V	W	D	T	L	L	A	E	M	V	L	N	L	G	T	L	Q	N	S	H	E	G	R	I	S	C	L	G	L	S	S	D	G	S	A	L	C	T	G
Template Known Secondary structure										S	S	S			S	S		S		S						S	S	S	S			.					T	T	S							T	T	T										S		S	S												S	S	S	S
Template Predicted Secondary structure																																.
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.		.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	K	S	H	H	I	S	V	Y	E	I	V	G	E
Query Conservation
Alig confidence					.
Template Conservation					.
Template Sequence		S	W	D	.	K	N	L	K	I	W	A	F	S	G	H
Template Known Secondary structure			T	T	.	S									S	S
Template Predicted Secondary structure					.
Template SS confidence
		363	.	.		.	.	.	.	370	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions