Job Description P52697 Confidence 99.67% Date Thu Jan 5 12:06:01 GMT 2012 Rank 68 Aligned Residues 295 % Identity 11% Template c3greA_ PDB info PDB header:signaling protein,protein binding Chain: A: PDB Molecule:serine/threonine-protein kinase vps15; PDBTitle: crystal structure of saccharomyces cerevisiae vps15 wd2 repeat domain Resolution 1.80 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.				.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.																																																								.	.	.
Query SS confidence																					.	.	.																																																								.	.	.
Query Sequence		Q	T	V	Y	I	A	S	P	E	S	Q	Q	I	H	V	W	N	L	N	.	.	.	H	E	G	A	L	T	L	T	Q	V	V	D	V	P	G	Q	V	Q	P	M	V	V	S	P	D	K	R	Y	L	Y	V	G	V	R	P	E	F	R	V	L	A	Y	R	I	A	P	D	D	G	A	L	T	F	A	A	.	.	.
Query Conservation																					.	.	.																																																								.	.	.
Alig confidence																					.	.	.																														.																										.	.	.
Template Conservation																																																					.
Template Sequence		T	P	Y	L	I	T	G	S	D	Q	G	V	I	K	I	W	N	L	K	E	I	I	V	G	E	V	Y	S	S	S	L	T	Y	D	C	S	S	T	V	T	Q	I	T	M	I	P	N	F	D	A	F	.	A	V	S	S	K	D	G	Q	I	I	V	L	K	V	N	H	Y	Q	Q	E	S	E	V	K	F	L	N	C
Template Known Secondary structure		S								T	T	S												T	T				S		S						S	S									T	T	S	S			.					T	T	S													T	T
Template Predicted Secondary structure																																																					.
Template SS confidence
		1093	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.		.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.
												77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	E	S	A	L	P	G	S	P	T	H	I	S	T	D	H	Q	G	Q	F	V	F	V	G	S	Y	N	A	G	N	V	S	V	T	R	L	E	D	G	L	P	V	G	V	V	D	V	V	E	G	L	D	G	C	H	S	A	N	I	S	P	D	N	R	T	L	W	V	P	A	L
Query Conservation		.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																																																																						.
Template Conservation																																																																																	.
Template Sequence		E	C	I	R	K	I	N	L	K	N	F	G	K	N	E	Y	A	V	R	M	R	A	F	V	N	E	E	K	S	L	L	V	A	L	T	N	L	S	R	V	I	I	F	D	I	R	T	L	E	R	L	Q	I	I	E	N	S	P	R	H	G	A	V	S	S	I	C	I	D	E	E	C	C	V	L	I	L	G	T	.
Template Known Secondary structure									G	G	G	G	S	S													S	S									T	T	S							T	T	T											G	G	G										T	T	S								.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		1172	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Query SS confidence																																																																											.	.	.	.	.	.	.
Query Sequence		K	Q	D	R	I	C	L	F	T	V	S	D	D	G	H	L	V	A	Q	D	P	A	E	V	T	T	V	E	G	A	G	P	R	H	M	V	F	H	P	N	E	Q	Y	A	Y	C	V	N	E	L	N	S	S	V	D	V	W	E	L	K	D	P	H	G	N	I	E	C	V	Q	T	L	D	.	.	.	.	.	.	.
Query Conservation																																																																											.	.	.	.	.	.	.
Alig confidence																																	.	.																																									.	.	.	.	.	.	.
Template Conservation																																	.	.
Template Sequence		T	R	G	I	I	D	I	W	D	I	R	F	N	V	L	I	R	S	W	S	F	G	D	H	A	P	I	T	H	V	E	.	.	V	C	Q	F	Y	G	K	N	S	V	I	V	V	G	G	S	S	K	T	F	L	T	I	W	N	F	V	K	G	H	C	Q	Y	A	F	I	N	S	D	E	Q	P	S	M	E	H	F
Template Known Secondary structure		T	T	S							T	T	T	T							B		T	T									.	.			T	T	T		T	T								S	T	T								T	T	T	T								S	S	S	S				G	G	G	G
Template Predicted Secondary structure																																	.	.
Template SS confidence
		1251	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.			.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.
										220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.																				270	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	M	M	P	E	N	F	S	D	T	R	W	A	A	D	I	H	I	T	P	D	G	R	H	L	Y	A	C	D	R	T	A	S	L	I	T	V	F	S	V	S	E	D	G	S	V	L	S	K	E	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	Q	P
Query Conservation		.	.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																									.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.
Template Sequence		L	P	I	E	K	G	L	E	E	L	N	F	C	G	I	R	S	L	N	A	L	S	T	I	S	V	S	N	D	K	I	L	.	L	T	D	E	A	T	S	S	I	V	M	F	S	L	N	E	L	S	S	S	K	A	V	I	S	P	F	S	D	V	F	I	P	T	Q	V	T	A	N	L	T	M	L	L	R	K	M
Template Known Secondary structure		S		B		S	S	G	G	G								S	G	G	G	G							T	T				.				G	G	G	T							T	T		G	G	G																			T	T
Template Predicted Secondary structure																																		.
Template SS confidence
		1329	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360		.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400	.	.	.	.	.	.	.
		273	.	.	.	.	.	.	280	.	.			.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure												.	.
Query SS confidence												.	.
Query Sequence		T	E	T	Q	P	R	G	F	N	V	.	.	D	H	S	G	K	Y	L	I	A	A	G	Q	K	S	H	H	I	S	V	Y	E
Query Conservation												.	.
Alig confidence												.	.														.
Template Conservation																											.
Template Sequence		K	H	D	I	I	N	S	I	S	T	C	E	V	D	E	T	P	L	L	V	A	C	D	N	S	.	G	L	I	G	I	F	Q
Template Known Secondary structure														S	S	S	S								T	T	.	S
Template Predicted Secondary structure																											.
Template SS confidence
		1410	.	.	.	.	.	.	.	.	.	1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.		.	.	.	.	.	1440	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions