Job Description P52697 Confidence 99.44% Date Thu Jan 5 12:06:01 GMT 2012 Rank 104 Aligned Residues 266 % Identity 11% Template c3fw0A_ PDB info PDB header:lyase Chain: A: PDB Molecule:peptidyl-glycine alpha-amidating monooxygenase; PDBTitle: structure of peptidyl-alpha-hydroxyglycine alpha-amidating2 lyase (pal) bound to alpha-hydroxyhippuric acid (non-3 peptidic substrate) Resolution 2.52 Å

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		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.																							.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	Q	V	Q	P	M	V	V	S	P	D	K	R	Y	L	Y	V	G	V	R	P	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	R	V	L	A	Y	R	I	A	P	D	D	G	A	L	T	F	A	A	E	S	A	L	P	G	S	P	T	H	I	S	T	D	H	Q	G
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.
Template Sequence		G	Q	V	S	G	V	A	L	D	S	K	N	N	.	L	V	I	F	H	R	G	D	H	V	W	D	G	N	S	F	D	S	K	F	V	Y	Q	Q	R	G	L	G	P	I	E	E	D	T	I	L	V	I	D	P	N	N	A	E	I	L	Q	S	S	G	K	N	L	F	Y	L	P	H	G	L	S	I	D	T	D	G
Template Known Secondary structure		S									T	T			.							T	T					T	T	T	B		T	T			B	S		G	G	G		S			S								T	T	T									T	T	T		S	S								T	T
Template Predicted Secondary structure															.
Template SS confidence
		515	.	.	.	.	520	.	.	.	.	.	.	.		.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.									.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.																																										.	.
Query SS confidence																															.	.	.	.	.	.	.	.																																										.	.
Query Sequence		Q	F	V	F	V	G	S	Y	N	A	G	N	V	S	V	T	R	L	E	D	G	L	P	V	G	V	V	D	V	.	.	.	.	.	.	.	.	V	E	G	L	D	G	C	H	S	A	N	I	S	P	D	N	R	T	L	W	V	P	A	L	K	Q	D	R	I	C	L	F	T	V	S	D	D	G	H	L	V	.	.
Query Conservation																															.	.	.	.	.	.	.	.																																										.	.
Alig confidence			.																												.	.	.	.	.	.	.	.																																										.	.
Template Conservation			.
Template Sequence		N	.	Y	W	V	T	D	V	A	L	H	Q	V	F	K	L	D	P	H	S	K	E	G	P	L	L	I	L	G	R	S	M	Q	P	G	S	D	Q	N	H	F	C	Q	P	T	D	V	A	V	E	P	S	T	G	A	V	F	V	S	D	G	Y	C	N	S	R	I	V	Q	F	S	P	S	G	K	F	V	T	Q	W
Template Known Secondary structure			.						T	T	T	T							T	T		S	S			S						T	T				S	S	T	T			S	S								T	T	T									S	S									T	T
Template Predicted Secondary structure			.
Template SS confidence
		594		.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.
				164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	A	Q	D	P	A	E	V	T	T	V	E	G	A	G	P	R	H	M	V	F	H	P	N	E	Q	Y	A	Y	C	V	N	E	L	N	S	S	V	D	V	W	E	L	K	D	P	H	G	N	I	E	C	V	Q	T	L	D	M	M	P	E	N	F	S	D	T	R	W	A	A	D	I	H	I	T	P	D	G	R
Query Conservation		.	.
Alig confidence		.	.																																			.	.
Template Conservation																																						.	.
Template Sequence		G	E	E	S	S	G	S	S	P	R	P	G	Q	F	S	V	P	H	S	L	A	L	V	P	H	L	D	Q	L	C	V	A	D	R	E	N	.	.	G	R	I	Q	C	F	K	T	D	T	K	E	F	V	R	E	I	K	H	A	S	F	G	R	N	V	F	A	I	S	Y	I	P	G	F	L	F	A	V	N	G	K
Template Known Secondary structure							S	S	S			T	T			S	S								T	T	T	T							G	G	G	.	.	T							T	T	T										G	G	G	T	T									T	T
Template Predicted Secondary structure																																						.	.
Template SS confidence
		673	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.			.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	L	Y	A	C	D	R	T	A	S	L	I	T	V	F	S	V	S	E	D	G	S	V	L	S	K	E	G	F	Q	P	T	E	T	Q	P	R	G	F	N	V	D	H	S	G	K	Y	L	I	A	A	G	Q	K	S	H	H	I	S	V	Y	E	I	V	G	E
Query Conservation
Alig confidence		.																																													.
Template Conservation		.																																													.
Template Sequence		.	P	Y	F	G	D	Q	E	P	V	Q	G	F	V	M	N	F	S	S	G	E	I	I	D	V	F	K	P	V	R	K	H	F	D	M	P	H	D	I	V	A	S	E	D	G	.	T	V	Y	I	G	D	A	H	T	N	T	V	W	K	F	T	L	T	E	K
Template Known Secondary structure		.			T	T		S										T	T	T										S	S	S			S	S								T	T	S	.							S	S	S
Template Predicted Secondary structure		.																																													.
Template SS confidence
			751	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.		.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions